Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0989 ATGGAAGGCTCAATGCAAGAGTCAAGTGCGACGTCTCTGAAAATCTCACTCTTAAAGCCAATGCTCAGAGGAGTCTCAATGCACAACATAAACAGACGTCTTAACATGATGAACAAAAACAGAGAGATATCCCTTTGTGGACTGAAAATGAGGGCTGTTCAGCTTTCAACAGATCACAGCACAAGTATTGAAGAGGAAGTGTTTAGAATAAGAGCAGAACACCCAGATGATAATCAAGCCATATTGAATGATAGAGTGAAAGGACAATTAAAAGTCACCAGAGCATTTGGTGCCGGATTCCTGAAGAGGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAGAATACAATTGAGGTTGAGCTTCCTGTTTACGATGCAATTTTGAAGTTCCAAAAAGATAAGCGCCCCGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACTGCAAAGGTCTTCCGTACATTCAATGCATCTATCACGTTGGATGATATGTTGAATAAGGAAACTAAAGAGGGTGATGTTGTCGAAAAGATTCTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACTTGTCACAAATTGAAAAGTTAACAAACAAGATTGGTGAGCTTCAGGATGTTCTGAAGGAGCTAAAGACAGATTTGGACAGAGCAAGGAAAGGAAGGTCCCCTCTAAAGGGTTCAGATGGAAAGACAAAAAGGAACTTGGCCCCTGAAGCAGAAAAGATCTCTCAAACCAATGCAAAGATTGAGAAAATGGAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTGGGCACGTCCAAGATAAACTATCTTGACCCTAGGATTACAGTTGCCTGGTGCAAACGGAATGAGGTTCCCATTGAAAAGGTTATTGTAGGAGAGATCAAGCACTCCCAAGCTGCTCATGTCACCAACTTGTGGAGGGACTTTTCCAGTGAGTTGATTGTGGGAAAGATCAAGTGCTTCTAA 1062 0.403 MEGSMQESSATSLKISLLKPMLRGVSMHNINRRLNMMNKNREISLCGLKMRAVQLSTDHSTSIEEEVFRIRAEHPDDNQAILNDRVKGQLKVTRAFGAGFLKRFNFLGKDSIKYENTIEVELPVYDAILKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKEGDVVEKILVYQHANKQVAIICNHQRSVSKSHLSQIEKLTNKIGELQDVLKELKTDLDRARKGRSPLKGSDGKTKRNLAPEAEKISQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRNEVPIEKVIVGEIKHSQAAHVTNLWRDFSSELIVGKIKCF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0989 353 PANTHER DNA TOPOISOMERASE I 103 323 - -
Ahy10g0989 353 PANTHER DNA TOPOISOMERASE 1 ALPHA 103 323 - -
Ahy10g0989 353 Pfam Protein phosphatase 2C 45 104 IPR001932 -
Ahy10g0989 353 Gene3D - 164 329 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Ahy10g0989 353 Coils Coil 353 353 - -
Ahy10g0989 353 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 288 306 IPR018521 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 Pfam Eukaryotic DNA topoisomerase I, catalytic core 43 240 IPR013500 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 SUPERFAMILY DNA breaking-rejoining enzymes 103 326 IPR011010 GO:0003677
Ahy10g0989 353 Gene3D Topoisomerase I; Chain A, domain 3 35 163 IPR014711 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 MobiDBLite consensus disorder prediction 244 263 - -
Ahy10g0989 353 PRINTS Eukaryotic DNA topoisomerase I signature 39 53 IPR001631 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 PRINTS Eukaryotic DNA topoisomerase I signature 160 174 IPR001631 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 PRINTS Eukaryotic DNA topoisomerase I signature 295 306 IPR001631 GO:0003677|GO:0003917|GO:0006265
Ahy10g0989 353 Coils Coil 269 289 - -
Ahy10g0989 353 Pfam C-terminal topoisomerase domain 274 321 IPR025834 -
Ahy10g0989 353 SUPERFAMILY PP2C-like 51 103 IPR036457 -
Ahy10g0989 353 SMART topeu 67 315 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Ahy10g0989 353 Coils Coil 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0989 Ahy-Chr10 19532713 19537642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0989 27 106 PP2C-type Phosphatase Gene Family AT2G46920 67.500 7.72e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0989 K03163 - gmx:100779575 382.104