Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0976 ATGTCAACACAACACGATTCTCGCTCTATAAACTGGCACTACACTGAGCTAGATGACAAAGACCTTGAAATCCGTGGCAAAACACTCTTCTTCGTCATCGTTCTCTTCTCCATTATACTCCTCACCACTGTCTTCTTCCTCTACACGCGCTGGGTCTGCCGCTACAACCACCACCACCGCTCCTCCGCCGCCCACGCGCGCCACGCGCCGCAGTCATCACTTCCTTCCCAGGGTCTTGACCAGGCGTCCATAAAGAAACTTCCGATCATCCTCCATCAGGCGCCAGCGGAGCCCCACGGCGGCGCGTGGGAGGAGACGGAGTGTTGCATCTGCCTGGGCGAGTTCGTCGACGGCGAGAAGCTGAAGGTTCTTCCGGCGTGTGAACACTATTTCCATTGTGAATGCGTTGATAAGTGGCTAATGCAACATTCTAGTTGCCCACTTTGTAGGGCTTCACTCAAACTTGAATCTTCGTTACCAAAGATTTTGATTCAAGAACCTCCCATTAGAATTGACATCCAATTTTAA 528 0.517 MSTQHDSRSINWHYTELDDKDLEIRGKTLFFVIVLFSIILLTTVFFLYTRWVCRYNHHHRSSAAHARHAPQSSLPSQGLDQASIKKLPIILHQAPAEPHGGAWEETECCICLGEFVDGEKLKVLPACEHYFHCECVDKWLMQHSSCPLCRASLKLESSLPKILIQEPPIRIDIQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0976 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 155 IPR013083 -
Ahy10g0976 175 SUPERFAMILY RING/U-box 103 156 - -
Ahy10g0976 175 PANTHER RING-H2 FINGER PROTEIN ATL66 3 165 - -
Ahy10g0976 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Ahy10g0976 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 165 IPR044675 -
Ahy10g0976 175 CDD RING-H2_PA-TM-RING 107 150 - -
Ahy10g0976 175 SMART ring_2 108 149 IPR001841 -
Ahy10g0976 175 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0976 Ahy-Chr10 18598788 18600116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0976 12 158 C3H Transcription Factor Family AT3G11110 41.722 1.86e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0976 - - aip:107623622 360.918