Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0907 ATGACATCTCTCTCTAAGCTCTTCAACCGTCTTTGCGGCAGAATAATAATCCTATTAGCATACCTGCTATTACAACTAATCATCTTAATTAAGAAGCTAGAATCATCATTTACAGGTCCAATTGCAAAATTACAGTACCTGAGATTCATCGAAGAGAAGAACCCAACGATTCCGTACACAAATGAGATGAAGCCACGTCACGTGCAGTGCACGGTGTGTTTGTCGGAGTTCAAGGAAGAGGAGAAAGTGAGGAGCCTTAAATGCCAACACGTGTTCCACAGGGACTGCTTGGACACGTGGCTGCAAGAATACCGCGCCACGTGTCCGTTGTGTCGGGTAAAATTGTTGCCGGACGATGTTGTCTCCAAGCGTCGTGTGCTTCGAAGCCAACTAGGATCTGATGTTAATGGTGGTGAGCGTCTTCCATTCTTTTTGTCCGCGTTACATGGTGGGAGTTAG 459 0.4597 MTSLSKLFNRLCGRIIILLAYLLLQLIILIKKLESSFTGPIAKLQYLRFIEEKNPTIPYTNEMKPRHVQCTVCLSEFKEEEKVRSLKCQHVFHRDCLDTWLQEYRATCPLCRVKLLPDDVVSKRRVLRSQLGSDVNGGERLPFFLSALHGGS* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0907 152 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Ahy10g0907 152 SUPERFAMILY RING/U-box 46 118 - -
Ahy10g0907 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 151 - -
Ahy10g0907 152 SMART ring_2 70 111 IPR001841 -
Ahy10g0907 152 Pfam Ring finger domain 69 112 IPR001841 -
Ahy10g0907 152 CDD mRING-H2-C3H2C2D_ZSWM2 69 112 - -
Ahy10g0907 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 117 IPR013083 -
Ahy10g0907 152 PANTHER - 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0907 Ahy-Chr10 15382185 15382820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0907 69 123 C3H Transcription Factor Family AT1G15100 58.182 6.20e-19 76.6