Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0871 ATGGCAGCAGCTATAGATATATACAATAGCATGATGACACAAGATTACTTATCATACTCTTGTAGTGATGAAGAGTTGATGAAAGCACTTGAGCCTTTTATTATGACAAGTGATTATTTTTCATCTAATTCTAATAATAGCAATAGTAACGATAATAATTCCTTACCCTCTTTTTCTCTCTCACCTTCTTCCCCTGCATCATCATCATCATCACTATACCCTTCTTATTACAATTCCTTCACTTCTAATTACAACCCTTCACCGTTAAATTCTACCACCCAAAGTTCCTCCATAAGACTCAACCAACTCACGCCATCTCAAATTCTCCAAATCCAATCACAAATCCATGTTGCACAACAACAAGAAAAGAATCAACATGCTTTGTTTCTAGGGCCAAAACCTGCCCCCATGAAGCATGCCGGCGTGACGAATTCCTCTGCGGCCGCGAAGCCTACAAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTTGGAACATTCGAAACGGCTGAAGAAGCAGCGTTGGCTTATGACAACGCTGCTTTTAAGTTAAGAGGAGAACTTGCACGGCTTAATTTCCCTCACCTTCGCCACCACGGGGCACGCGTGTACGGTGAATTCGGGGAAATCAAGCCGTTACCCTCTTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAGGCTTGGAGAAAACAGAGAAGGTTGTAGTGGATACAAAGCCTAAGATAGAGGAAAATGCAACTGAATCCGACGTTGGATTTGGTTGTGCTGAGTTTGAGGATTATAAGTTGGAGAAGAAGCCAAAGTTGTCTCCTCCTTTGTTGTCTGATGAATCATCCGCTGCGGGCGGTGTGTCTTCGCCGGAATCCGATATCACTTTCTTGGATTTCTCGGATCCAGATGAAATTGATAACCTTGGGTTGGATTTGAAGAAGTATCCTTCAGTGGAGATTGATTGGGAGTCTATATGA 1020 0.4392 MAAAIDIYNSMMTQDYLSYSCSDEELMKALEPFIMTSDYFSSNSNNSNSNDNNSLPSFSLSPSSPASSSSSLYPSYYNSFTSNYNPSPLNSTTQSSSIRLNQLTPSQILQIQSQIHVAQQQEKNQHALFLGPKPAPMKHAGVTNSSAAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGELARLNFPHLRHHGARVYGEFGEIKPLPSSVDAKLQAICEGLEKTEKVVVDTKPKIEENATESDVGFGCAEFEDYKLEKKPKLSPPLLSDESSAAGGVSSPESDITFLDFSDPDEIDNLGLDLKKYPSVEIDWESI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0871 339 MobiDBLite consensus disorder prediction 285 312 - -
Ahy10g0871 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 339 - -
Ahy10g0871 339 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Ahy10g0871 339 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 Pfam AP2 domain 155 204 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 CDD AP2 153 213 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Ahy10g0871 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 339 - -
Ahy10g0871 339 MobiDBLite consensus disorder prediction 42 61 - -
Ahy10g0871 339 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0871 Ahy-Chr10 13073940 13075691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0871 1 339 AP2-EREBP Transcription Factor Family AT1G78080 47.191 5.76e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy10g0871 AP2 1.70E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0871 K09286 - gmx:100815162 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1183 20 21013951 21015634 Ahy10g0871 10 13073940 13075691 hybridization