Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0844 ATGTCCGCTCCCATAAATCAGTCTGAGGATCCGAATTCTCCGGATCCGAATTGGAATTCGGATCCACAACTTCCGCTCCGTAACCTCGAACAGATCCGAACCCGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCACCTCCAACAACCCTCTCTCCGGCGACCAATCCGCCGCCGTCTCCGATCAAATCGCCTCCGTCATCCACCAAAGCATCGCCCACGCCTCCGCCCTCGTCTCCTACTCTAAAACCTTCCACCCGCCGGGTTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGACCTATCAGCCAGTGTCGAGAAACTCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGACGAGGACACCGCAACCGATGAGTTTGCCGATAGCGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACCTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTGCGCATGCATATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCACTCGCGAAGCCGGAGAATCCGTCGTCCGCCGCCGTGCGCAGCCGGTTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGCTTCAGGCCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTATTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAGAATTGCGGAGAGTCGAAGTGGAAGTGCTCTTGTGGGACCACGTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGACGATAATAAGGGCAAGCATGTGCAGGAAGATGATGATAGTGATCATTTTAGTGATTTGCCTGATGGCTTTTTTGATGATTTGGGTGATTTGAGCTCTTTAGGGTTTCCCTTAATTTAA 999 0.5455 MSAPINQSEDPNSPDPNWNSDPQLPLRNLEQIRTRLDSLHRFLSESITSNNPLSGDQSAAVSDQIASVIHQSIAHASALVSYSKTFHPPGSTPAAAPPLPRVDLSASVEKLKRASDLKIEPPDEDTATDEFADSDEIVELDAVEILAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENPSSAAVRSRFSCPFEGCNRNKNHRRFRPLKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEDDNKGKHVQEDDDSDHFSDLPDGFFDDLGDLSSLGFPLI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0844 332 Gene3D Classic Zinc Finger 151 174 - -
Ahy10g0844 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Ahy10g0844 332 Gene3D Classic Zinc Finger 218 290 - -
Ahy10g0844 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 12 308 - -
Ahy10g0844 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Ahy10g0844 332 MobiDBLite consensus disorder prediction 1 26 - -
Ahy10g0844 332 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Ahy10g0844 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Ahy10g0844 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 308 IPR044300 GO:0010044|GO:0010447
Ahy10g0844 332 SMART c2h2final6 236 257 IPR013087 -
Ahy10g0844 332 SMART c2h2final6 151 173 IPR013087 -
Ahy10g0844 332 SMART c2h2final6 198 231 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0844 Ahy-Chr10 12148294 12149851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0844 134 292 C2H2 Transcription Factor Family AT1G34370 63.190 2.80e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy10g0844 zf-C2H2 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0844 - - cam:101491258 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1144 20 19388227 19389812 Ahy10g0844 10 12148294 12149851 hybridization