Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0815 ATGCATCACCCTGACTACAACCATCGTCAGCCACCGCCATTTCGCCGCCACTTCTCGAAGCCAATCGATTTTCACCCTAACCACTACCGTCCGCCGGGACCTCCAAATCCCATCGCCTTCCAGGCTCCCAATTTTGTTCTCCACCTCCGCCGCGGCCGCCGCCATCTCCGCCGCGACCTCATAAACTCGATCATCTCCCAGTGCCCTTCCAAACCACAATCTTTCTCAATTTTGCCCTATTCCTCCGACCATAACTACCACCGCCGTTCCTCGTCCACCGTCGATGCGGCGATCCTCAATTTCCTTCAGTGGGTGGACACGCTCAACGCCGTTGCGTATCTCTGGGAAACGCGACTCGACGGCATGCACGACCTAACTCCGGAGCTGAAGTCCAATGTGATGGTCCCTTCCGACGAGGACGAACTCTATTCTCGGCTACGCGCTGTCTTCGCGCGTCACGTGAAGAGTCTCATGCAAGAAGCGAAGGAATTGAAGCGTTGGGAAGGGGAGAGTGAGCGATTAACGAAGGAGATCGCGGGTATGGAGCCACAGAAGAAGAACAAACATTATCAAGTTGGGGAATTTTTTCAGATGAATGAGAATAAGAAAAGGTTTGAGGAAGAGAAAAATCTGGTGGAACGGAGGGTGAGGGAATTTCGGTGCGCCATGGAGTGCCTACTGAAGCTTCTAGAAGAGAAGGGTGGTGTTGATGAGGAAAGGAATGAAGGGGTTACTGGTAATTATTATTATCATGATTATGATTATGATGCTGTGTTTAGGTTTGATGGAAGGTTGAATTGGAAGAGGGTTCACAGTATTATTATGAGGGAGCGTCGTAGACTTGAGGAGGGTTTGCCAATTTACGCTTACCGGAGGGATATTCTTCACGACATTCATCATCAGCAGATAACGGTATTGGTTGGAGAGACTGGTTCTGGAAAGAGTACTCAGCTGGTACAGTTTCTTGCGGATTCAGGTGTAGGAGCTGCTGAGTCGATTATATGCACCCAACCCCGAAAAATCGCTGCCAGATCATTAGCTCAAAGAGTACAGGAAGAAAGCAATGGATGTTATGAAGGACATTCTGAGTCTGGCATTGCCCCTTATGTTTCTGATGTTGTCAGAATGGCAATCGAGATTCACAAAACAGAGGAAGAGGGCACTATTCTTGCATTTTTGACCTCACAGATAGAAGTGGAATGGGCGTGTGACAACTTTGAAGCTCTGTCTGCAGTTGCTTTGCCCTTACATGGGAAACTTTTGCCCGGTGAGCAATTTCATGTTTTCCAGAACTATCCTGGAAAAAGGAAAGTGATATTTGCAACCAATCTTGCTGAGACATCTCTCACAATTCCTGGGGTTAAGTATGTGATAGATTCTGGTTTGATTAAAGATAGTCGATATGATCCTGGCAGTGGGATGAATGTTCTTAAGGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCCGGCCGTGCTGGGAGGACTGAACCTGGTCGGTGCTATAGATTGTACTCTGAAGCTGATTATCAGTGCATGGAACAAAATCAAGAACCTGAAATTAGAAGAGTGCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGAGTTTGATTTTGTTGATGCTCCAAGTCAAAGCTCCATTGAGATGGCTATCCGGAATCTAATCCTCTTAGGAGTCATTCAAATGAAGAATAATGTTATTGAATTAACAAATGAAGGTAGGTACCTGGTAAGAATGGGGATCGAACCTAGGCTTGGTAAACTGATTCTTGGCTGTCTTCATCATACACTGGGTAGAGAAGGCATTGTCCTTGCTGCCTTGATGGCTAATGCTAGCAGCATATTCTGCAGAGTTGGTAGTGAAAAGGATAAGCAAAGATCTGATTGTCTTAAAATGCAATTTTGCCATTGTGATGGCGACCTCTTTACCCTTCTTTCTGTGTACAAGGAATGGGAGGGTTTGCCTCGGGAGAGGAGGAACCAGTGGTGTTGGGAAAATAGTATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTATAGAGCTAGAATCCTGTCTTGAGCGTGAACTTAACCTTGTTGTTCCCAGTTACTGGCGTTGGACACCCCAAATGCCCTCTGAATGTGATATGTATCTGAAAAGGGTTATACTGTCCTCCCTTCCTGAGAATGTAGCCATGTACTCTGGATGCAAGCAACTTGGTTATGAAGTGGCACAAACTGGACAACATGTTCAGCTTCATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTAGTTGGGTGGTTTTTAGTGAGCTTCTTTCACATTCTAATCAATATTTGGTCTGTGTAAGTGCTTTTGATTTTGAATCATTGCACAGCCTTGACCCTCCTCCCTTGTTCGATGTGTGCAATATGGAAAAGCGGAAATTGGAAACCAGGACATTGTCTGGTTTTTGTTGTACTCTTCTCAAGAAATTTTGTGGAAAAGGCAACGGTAATTTGATTAGTCTTGTGTCACGCATACGGAAAGTTTGTGAGGATGAACGAATTTCCATTGAAGTTAATGTTGACCACAATGACATTCAGTTATATGCCACATCACATGATATGGAAACAGCCGTTCAATATGTAAATGAGGTTTTAGAATGTGAGAAAAAGTGGTTACGTACCGAGTGTATTGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCTATAGCTTTGTTTGGCTCTGGTGCAGAAATTAAGCATTTAGAACTTGGGAAGCGTTCCCTGAGTGTTGACGTTTGTCACCCAAACACAGATGCAATTGAAGACAAACAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGCAAGTGTCTGTTCTGTCCACAAGTACACATGCACTGGGAGGGATGTTGATGACAGGGAAAAGTGGGGCAGGATTACATTTCTTTCCCCGGATGCTGCTTTAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTGTGGCTCTCCTTTGAAAATTTCTCACTCACAAACAGCTTCTGGAGATAAATCATTTTTGTTTCCTGCCGTCAAAGCAAAAATCTTTTGGCCTCGTAGGCTTAGCAAGGGGGTTGCGATAGTTAAATGTGACATAAAGGATGTTGACATCATGTTGAGAGATTTCTATAACCTTTCTATAGGAGGAAGGTATGTACGGTGTGAACCTGGTAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCAGATGCTGAAATTTTAGATGTAGTAAGAAATGCTACAAGTATAAGGATTTCAGACTTTTTCTTGATTAGAGGAGATGCTGTTGGGAATCCACCAGTCAGTGCCTGTGAAGAGGCGCTTCTTAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCATATTAACTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAGGGATGTATCCATGAGAGCTTTAATCACGTTTGATGGAAGACTACATTTAGAGGCAGCAAAAGCTTTAGAGCAAATTGAGGGAAAGGTGTTGCCAGGATGTCTTTCATGGCAGAAGATAAAATGTCAGCGCGTCTTCCATAGCTCCTTGATAGTTCCTCTGCCAGTGTACCGTGTAATTAGGGAAGAATTGGAGAAAATACTTAAAAGCTTCAGTAATTTAAAGGGTGTTGAATGTAGACTGGAAAAGACTTCCAATGGCTCCCAGAGATTGAAAATTACAGCAAATGCCACACAGACAGTAGCAGAAGTTCGGAGACCTTTCGAAGAATTATCAAGAGGGAAAAGAATCGACCATGCCAGCCTCACCCCTGCAGTTGTGCAACTCTTGCTCTCTCGAGAGGGCTTTAATCTCAAAAGCTCATTGCAGCAGGAGACAGGAACTTACATTCTTATTGACAGGTACAACCTGAGTGTACGTGTGTTTGGGCCCCCAGACAAGGTTTGCTTGGCTCAGCAGAAACTGATTCAATCCCTACTCTCTTTCCATGAGGCAAAGCAATTGGAAATCCATCTGAGGGGCCGGGATCTACCTCCTGACTTAATGAAGCAGGTGGTGAAGCAATTTGGACCAGATCTTAGTGGATTGAAAGTGAAGGTACCTGGGGCAGATCTTGTACTAAACATACGCCGCCAGATAATCTATCTTCGTGGCAACAAGGAGTTGAAACAAAAAGTAGAGGAGTTCATTTTTGAGATCGTGCGTTCTAGTCATCGTGCTGTTGAGGGATTGGGCACCGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCTGCTTGAAGGTTGTTGTCACTTATTCTGCCGTTCATGCCTGGTGGATCAATGCGAATCTGCTATAAGAAACCAAGGTACTTTCCCGATATGTTGTGCTCGGGAGGGCTGTGGAGATCCCATTCTGGTCACAGATTTGAAGGCTCTCTTACTGGGTGACAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGATCTTTTGTGGCATCCAGTGGGGGAACATACAGATTTTGCCCGTCACCTGACTGCCCCTCCGTTTATCGAGTTGCTGATCCTGGGACAGCCGGTGAGCCATTTGTATGCGGGGCATGTTATTCAGAAACTTGTACAAGGTGCCACTTGGAGTATCATCCGTACATATCATGCGATCAATATCGGGAATTCAAGGACGACCCCGACTCATCGCTGAAGGCATGGTGCAGCGGTAAAGAACATGTTAAGCGGTGCCCATCTTGTGGGTATACAATTGAGAAGGTAGATGGTTGCAACCATATTGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCTTGGAATTCTTTGGAAGTAGTGATAATTGCTATGACCATTTGAGAAATATACACATGGCCATCATTTGA 4899 0.4495 MHHPDYNHRQPPPFRRHFSKPIDFHPNHYRPPGPPNPIAFQAPNFVLHLRRGRRHLRRDLINSIISQCPSKPQSFSILPYSSDHNYHRRSSSTVDAAILNFLQWVDTLNAVAYLWETRLDGMHDLTPELKSNVMVPSDEDELYSRLRAVFARHVKSLMQEAKELKRWEGESERLTKEIAGMEPQKKNKHYQVGEFFQMNENKKRFEEEKNLVERRVREFRCAMECLLKLLEEKGGVDEERNEGVTGNYYYHDYDYDAVFRFDGRLNWKRVHSIIMRERRRLEEGLPIYAYRRDILHDIHHQQITVLVGETGSGKSTQLVQFLADSGVGAAESIICTQPRKIAARSLAQRVQEESNGCYEGHSESGIAPYVSDVVRMAIEIHKTEEEGTILAFLTSQIEVEWACDNFEALSAVALPLHGKLLPGEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLIKDSRYDPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMEQNQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSQSSIEMAIRNLILLGVIQMKNNVIELTNEGRYLVRMGIEPRLGKLILGCLHHTLGREGIVLAALMANASSIFCRVGSEKDKQRSDCLKMQFCHCDGDLFTLLSVYKEWEGLPRERRNQWCWENSINAKSMRRCQDTIIELESCLERELNLVVPSYWRWTPQMPSECDMYLKRVILSSLPENVAMYSGCKQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFSELLSHSNQYLVCVSAFDFESLHSLDPPPLFDVCNMEKRKLETRTLSGFCCTLLKKFCGKGNGNLISLVSRIRKVCEDERISIEVNVDHNDIQLYATSHDMETAVQYVNEVLECEKKWLRTECIEKCLYHGSGFSPIALFGSGAEIKHLELGKRSLSVDVCHPNTDAIEDKQLLMFLEKNTSASVCSVHKYTCTGRDVDDREKWGRITFLSPDAALRAAELDGEEFCGSPLKISHSQTASGDKSFLFPAVKAKIFWPRRLSKGVAIVKCDIKDVDIMLRDFYNLSIGGRYVRCEPGRKDVDSVVISGFDKELSDAEILDVVRNATSIRISDFFLIRGDAVGNPPVSACEEALLKEISPFMPKKDPHINSCRVQVFQPEPRDVSMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRVFHSSLIVPLPVYRVIREELEKILKSFSNLKGVECRLEKTSNGSQRLKITANATQTVAEVRRPFEELSRGKRIDHASLTPAVVQLLLSREGFNLKSSLQQETGTYILIDRYNLSVRVFGPPDKVCLAQQKLIQSLLSFHEAKQLEIHLRGRDLPPDLMKQVVKQFGPDLSGLKVKVPGADLVLNIRRQIIYLRGNKELKQKVEEFIFEIVRSSHRAVEGLGTGPSCPICLCEVEDGYLLEGCCHLFCRSCLVDQCESAIRNQGTFPICCAREGCGDPILVTDLKALLLGDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYISCDQYREFKDDPDSSLKAWCSGKEHVKRCPSCGYTIEKVDGCNHIECKCGKHVCWVCLEFFGSSDNCYDHLRNIHMAII* 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0815 1632 Coils Coil 202 222 - -
Ahy10g0815 1632 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 363 1562 - -
Ahy10g0815 1632 Pfam Helicase conserved C-terminal domain 378 497 IPR001650 -
Ahy10g0815 1632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 538 IPR001650 -
Ahy10g0815 1632 Gene3D - 1551 1630 - -
Ahy10g0815 1632 PANTHER ATP-DEPENDENT RNA HELICASE 17 357 - -
Ahy10g0815 1632 PANTHER ATP-DEPENDENT RNA HELICASE 363 1562 - -
Ahy10g0815 1632 Coils Coil 1624 1632 - -
Ahy10g0815 1632 Gene3D - 358 518 IPR027417 -
Ahy10g0815 1632 ProSitePatterns Zinc finger RING-type signature. 1439 1448 IPR017907 -
Ahy10g0815 1632 ProSiteProfiles TRIAD supradomain profile. 1419 1632 IPR044066 -
Ahy10g0815 1632 SUPERFAMILY RING/U-box 1577 1624 - -
Ahy10g0815 1632 Gene3D - 520 563 IPR042035 -
Ahy10g0815 1632 SMART helicmild6 400 498 IPR001650 -
Ahy10g0815 1632 CDD SF2_C_RHA 369 506 - -
Ahy10g0815 1632 SMART ha2_5 558 654 IPR007502 GO:0004386
Ahy10g0815 1632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1420 1499 IPR013083 -
Ahy10g0815 1632 SUPERFAMILY RING/U-box 1422 1483 - -
Ahy10g0815 1632 Pfam Helicase associated domain (HA2) 559 653 IPR007502 GO:0004386
Ahy10g0815 1632 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 17 357 - -
Ahy10g0815 1632 ProSiteProfiles Zinc finger RING-type profile. 1423 1465 IPR001841 -
Ahy10g0815 1632 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 722 797 IPR011709 -
Ahy10g0815 1632 SUPERFAMILY RING/U-box 1506 1560 - -
Ahy10g0815 1632 SMART ibrneu5 1556 1620 IPR002867 -
Ahy10g0815 1632 SMART ibrneu5 1490 1555 IPR002867 -
Ahy10g0815 1632 Pfam IBR domain, a half RING-finger domain 1498 1555 IPR002867 -
Ahy10g0815 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 676 IPR027417 -
Ahy10g0815 1632 Coils Coil 157 177 - -
Ahy10g0815 1632 ProSitePatterns Zinc finger C2H2 type domain signature. 1607 1628 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0815 Ahy-Chr10 10965927 10972926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0815 1438 1614 C3H Transcription Factor Family AT2G31770 29.032 1.61e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0815 K12818 - gmx:100810008 2046.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1114 20 18029514 18036512 Ahy10g0815 10 10965927 10972926 hybridization