Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0781 ATGGCGATGGTTTCTTCTCTCTCTGCGGCGCTACTTCCTCCTCTTTCTCTCTCTACCTCTTCCTCCTCGCTCTCTTCCAACCCAAAGTTTTCGGCTTTGTGCTTTCAATCTGGTAACACCTTCAAGCTCAGAACCCCTAAGCTGCTTCACTCATCAACTAGGGTTTATGCCGCGCCTGAAGTTTTGGATTCCGAGGAACCGCTAGACGTACCTCCAGAAACCCTTGGTGATGATGAATCTGAGGCCACCACCTTTCAGGTTGGAGATTCAGACACTCGTACCACTTCCTCAATTAGCATTGGTGGTGATCCGGATACGATGGCGCCTAAGCAGAAGATTAGAATCAAACTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATACTAGATGCAGCAAGGAATACCAATGCAAAAACCATGGGTCCTGTACCATTGCCAACTAAGAAGAGAATTTATTGTGTTCTTAAATCGCCACATGTACATAAGGATGCTCGATTCCATTTTGAGATCAGAACACATCAGCGTCTCATTGATATTTTGTATCCTACAGCACAAACAATAGATTCTCTGATGCAGCTTGATCTTCCTGCTGGTGTGGATGTAGAGGTCAAGCTCTGA 630 0.4587 MAMVSSLSAALLPPLSLSTSSSSLSSNPKFSALCFQSGNTFKLRTPKLLHSSTRVYAAPEVLDSEEPLDVPPETLGDDESEATTFQVGDSDTRTTSSISIGGDPDTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0781 209 ProSitePatterns Ribosomal protein S10 signature. 136 151 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 MobiDBLite consensus disorder prediction 65 105 - -
Ahy10g0781 209 Gene3D Ribosomal protein S10 domain 103 209 IPR036838 -
Ahy10g0781 209 MobiDBLite consensus disorder prediction 79 102 - -
Ahy10g0781 209 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 4 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 Hamap 30S ribosomal protein S10 [rpsJ]. 110 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 Pfam Ribosomal protein S10p/S20e 114 208 IPR027486 -
Ahy10g0781 209 TIGRFAM rpsJ_bact: ribosomal protein uS10 111 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 SMART Ribosomal_S10_2 114 208 IPR027486 -
Ahy10g0781 209 PANTHER BNAC05G40270D PROTEIN 4 209 - -
Ahy10g0781 209 PRINTS Ribosomal protein S10 family signature 147 162 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 PRINTS Ribosomal protein S10 family signature 112 125 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 PRINTS Ribosomal protein S10 family signature 168 182 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ahy10g0781 209 SUPERFAMILY Ribosomal protein S10 112 209 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0781 Ahy-Chr10 9941021 9943386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0781 111 209 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 7.50e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0781 K02946 - gmx:100526953 306.219