Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0765 ATGGCACTTCCATTACCATTTATGTTACTTCTACTATTCCTTGCACCTTCCATTATTTCTTCATCCCCAATTCAAGACCCTGAATTAGTAGTAGAAGAAGTGCACAGGAGCATTAACAATGCATCGGCAAGGAGGAACATGGGATTTCTTTCTTGTGGGAGTGGCAACCCGATCGACGATTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCGGACTGTGCCATCGGATTCGGCAAGCACGCCATCGGAGGAAGAGACGGCAAAATATACGTGGTGACGGACCCCGGCGACCACCCTGTTAGCCCAAAGCCAGGGACACTAAGATATGGTGTGATTCAAGAAGAGCCATTGTGGATTGTGTTCAAGCGTGACATGGTAATTAAGCTTAAACAAGAGCTAATGATGAATTCTTTCAAGACCATTGATGGAAGAGGAGTTAGTGTCCACATTGCTGGTGGACCCTGCATCACAATTCAATATGTTTCAAACATTATAATCCATGGAATTAACATTCATGATTGTAAGCAAGGTGGGAATGCTTATGTTAGAGACTCTCCTTCACATTACGGCTGGAGGACTCTTTCGGACGGCGATGGCGTCTCCATCTTTGGTGGCAGCCATGTTTGGGTGGACCATTGCTCGCTGTCGAACTGTCGCGACGGATTAATCGACGCCATTCATGGATCTACTGCCATTACCATCTCCAATAACTATATGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTTCACTCAAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGCCTAGTTCAGAGGATGCCAAGATGTAGGTATGGGTATTTCCATGTTGTGAACAATGACTATACTCATTGGCAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAACAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGGATACACCACAAAGTAAATGGAAGAATTGGAATTGGAGGTCTAATGGAGATTTAATGTTAAATGGTGCATTCTTTACCCCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTAGCAGCCAAATCTTCTTCTCTTGTTGCTTCTATCACTGCTTCAGCTGGATCTCTTAAATGTAGAAAGGGATCACGCTGTTGA 1212 0.4431 MALPLPFMLLLLFLAPSIISSSPIQDPELVVEEVHRSINNASARRNMGFLSCGSGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVSPKPGTLRYGVIQEEPLWIVFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPQSKWKNWNWRSNGDLMLNGAFFTPSGAGASSSYARASSLAAKSSSLVASITASAGSLKCRKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0765 403 Pfam Pectate lyase 136 320 IPR002022 -
Ahy10g0765 403 PANTHER PECTATE LYASE 18-RELATED 1 400 IPR045032 GO:0030570
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Ahy10g0765 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Ahy10g0765 403 Gene3D - 55 396 IPR012334 -
Ahy10g0765 403 PANTHER PECTATE LYASE 1 400 - -
Ahy10g0765 403 SUPERFAMILY Pectin lyase-like 40 398 IPR011050 -
Ahy10g0765 403 SMART amb_all 129 326 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0765 Ahy-Chr10 9470125 9473265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0765 1 403 Polysaccharide Lyase AT5G63180 77.833 0.0 655
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1064 20 16413989 16417027 Ahy10g0765 10 9470125 9473265 hybridization