Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0741 ATGGACAATAATAATGGTTGCTTCTCTTCACCAAGACGTGATGCTTTTCCAGCAGGTCTAAGAGTCCTTGTTGTTGATGATGACCCAACATGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGTTCCTATGAAGTGACAACATGTTGTTTGGCGAGGCATGCTCTACACTTGCTTCGCGAAAGGAAAGACGGGTATGATATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATACACGAGGCGAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATTGGAGCAATGCGATGATGGGAACCTGTTTGCCCTTGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAGAGAATTGATAGATCCATCATCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATATTGGTCCAAAGAAAATACTAGATCTCATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGGCTTTACCTAAGCCGGCTTCAAAAAGAGAACGATCTGAAGTCGTCTTCCTCAATCGGAATGAACCCGGATTTAGCCGCAACAGATCTAGGGAGTTTTGTTGGAGTTCAGAACTCAGTGAGCAAGAAACAAAATGATGTTTCAATTGACAGCTGCAGTTATTCAGAAGGAGCACTGCAACTTCAGAACATGGAAACCAAAACTCATGAAGGTAGCAGTGATCCAAACGGAACTATTTCTCCGCCTGCCACTACAGAAAAAGGAAGAACTATGATCAGAAACTTTGTTTCCGAGAAAAAGATGAGAAAGAACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACAGCAGTAATTGATTGCTCCATTCCAACACAATTCTCTTGGAATGAAGTTCCAGAAATTCAACTCAAAGATCACAAGCCACTTGTTCAGTTAGAGGGTAACTTAAGCCACAAGTTTCCAGTAACAGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACCATCAATTGGTTCGATTGGTTCTCCATCTTTGACAGGGGAGGAGGTCACGGCATGCATCAAAACAAAACCTTTGTGTGCAGATTACAAGTGTGAATACAAGAGTTCCGTGAGTTCGATAGGATCGGCAGTTGACAATAACACGTTCCCTATTGAACCAGGAAGCCTTATGATGAATGATCCATCAACAGCACCAATTTCAACTACAAATTCGGGATTGAAAACACAAGCATCTAACCTCAACAGCATTTCGGATATGGAATTTTGCCAGAGAAACCTACTTTTGGATGCAGTTTCGCTACCGTTGGACGATGATCTGCATTTTAATTGGCTACATGGGGAATGCTCTAACATCAACTTCAGCCTGCAGAACATAGGGTATTATGATCCAGGGCTTATTGCAGAAATTCCAACTCATTACTATGATTCAGCAGCAGATTATGCAGTCATAGATCAAGGTCTATTCATATCATGA 1740 0.4184 MDNNNGCFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLARHALHLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFEGFESIHLMRNGLEQCDDGNLFALEDMTSTKKRKDADNKHDDRELIDPSSTKKARVVWSVDLHQKFVKAVNQIGFDIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSSIGMNPDLAATDLGSFVGVQNSVSKKQNDVSIDSCSYSEGALQLQNMETKTHEGSSDPNGTISPPATTEKGRTMIRNFVSEKKMRKNQPFDSLEPEGNHTAVIDCSIPTQFSWNEVPEIQLKDHKPLVQLEGNLSHKFPVTGKKHQIQVDHQSPSIGSIGSPSLTGEEVTACIKTKPLCADYKCEYKSSVSSIGSAVDNNTFPIEPGSLMMNDPSTAPISTTNSGLKTQASNLNSISDMEFCQRNLLLDAVSLPLDDDLHFNWLHGECSNINFSLQNIGYYDPGLIAEIPTHYYDSAADYAVIDQGLFIS* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0741 579 Gene3D - 20 201 - -
Ahy10g0741 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 254 IPR006447 GO:0003677
Ahy10g0741 579 Pfam Myb-like DNA-binding domain 204 253 IPR001005 -
Ahy10g0741 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 - -
Ahy10g0741 579 SUPERFAMILY Homeodomain-like 200 258 IPR009057 -
Ahy10g0741 579 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Ahy10g0741 579 Gene3D - 202 260 - -
Ahy10g0741 579 SMART REC_2 20 132 IPR001789 GO:0000160
Ahy10g0741 579 CDD REC_typeB_ARR-like 22 136 - -
Ahy10g0741 579 PIRSF RR_ARR_type-B 1 539 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ahy10g0741 579 SUPERFAMILY CheY-like 19 148 IPR011006 -
Ahy10g0741 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 IPR045279 GO:0009736
Ahy10g0741 579 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0741 Ahy-Chr10 8827616 8830743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0741 14 259 Response Regulator Gene Family AT2G25180 56.400 1.00e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy10g0741 Response_reg 3.00E-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0741 - K14491 gmx:100797421 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1029 20 15453851 15457470 Ahy10g0741 10 8827616 8830743 hybridization
Ahy10g0741 10 8827616 8830743 Ahy13g4440 13 144495392 144498212 PCT
Ahy13g4440 13 144495392 144498212 Ahy10g0741 10 8827616 8830743 PCT