Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0615 ATGTCCTTAACAGGGCGTCCTCGAGTGATCGTGAATGGAGTCCGAAGAACAAGAAGTTTCCACTGTTTCTGGTGCCTTAACTGCCAACGAACAGTGAGAATACCTGCTACCTATCCAAACGGTTCTCTCTGCCCTTATTGCTTCAATAGACTCCGTTACGAGCTTGACATAACAAGGCCAACAAGGTTTCTCTTCACCAACAACAACAATTTGGAACCTTCACCAGCTTCTCAGCTATTGAATGGCCTCGCTCTCATTCTCCATCCACCTCAACACAATCATAACCGATGGGAAGGACAAGAAGAAGAAACACTAGAAAATCAACAAGATCCACGAGCTTGGATTACTCTCAGATTCGTGAGGCCAAATAACAACGGTCCACAGAGACTTATGCCTCCACCGCTGCAGCCGCAACCGCAAGCCAACAATAACAGCGATCCGATTGATGAATTCATTCAAAATTTGGTCGAGAATAATAACAACCGGCCGGGCCCGCCTCCGGCTTCGTCTTCGGCCATCGCAGCGTTGCCGGTGGTGAGGCTGGCGCGAGAACAATTGGCTAGTGATCCGAACTGTGCAATATGCAAAGATGAATTTGAGGTAGATGGAGAAGTGAGGGAGTTGCCGTGCAAGCATTTCTACCATTGCGATTGCATTCTGCCATGGCTGCGCATCCATAATACCTGCCCTGTCTGCCGCTATGAGCTTCCTCCTGTTGCGGCGAGTGAGAATCAGAATAATAATCATAATCATAATATTAATAATAATGAGCAGCAGAGTTTTATTAGCTTCAACTGGATTTTGAGACAAATTGCTTCGATCAGTAGCCCCCTTCGTGCTATCTTGGATTATTGGACTCACAGACATTACTCTAATCACCAAGATAACAATGCTCCTGCTCATGATGATGGAGGTACTATTAGCTCTTGGTGGAGAGAATTGTTCATCTTATAG 954 0.4602 MSLTGRPRVIVNGVRRTRSFHCFWCLNCQRTVRIPATYPNGSLCPYCFNRLRYELDITRPTRFLFTNNNNLEPSPASQLLNGLALILHPPQHNHNRWEGQEEETLENQQDPRAWITLRFVRPNNNGPQRLMPPPLQPQPQANNNSDPIDEFIQNLVENNNNRPGPPPASSSAIAALPVVRLAREQLASDPNCAICKDEFEVDGEVRELPCKHFYHCDCILPWLRIHNTCPVCRYELPPVAASENQNNNHNHNINNNEQQSFISFNWILRQIASISSPLRAILDYWTHRHYSNHQDNNAPAHDDGGTISSWWRELFIL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0615 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 240 IPR013083 -
Ahy10g0615 317 Pfam Ring finger domain 191 233 IPR001841 -
Ahy10g0615 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 22 271 - -
Ahy10g0615 317 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Ahy10g0615 317 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 22 271 - -
Ahy10g0615 317 Coils Coil 239 259 - -
Ahy10g0615 317 MobiDBLite consensus disorder prediction 125 147 - -
Ahy10g0615 317 CDD RING-H2_RNF126_like 192 233 - -
Ahy10g0615 317 SUPERFAMILY RING/U-box 173 244 - -
Ahy10g0615 317 SMART ring_2 192 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0615 Ahy-Chr10 6183810 6185569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0615 1 287 C3H Transcription Factor Family AT1G68180 32.877 8.96e-43 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0884 20 11386831 11388342 Ahy10g0615 10 6183810 6185569 hybridization