Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0567 ATGGGAGATAACAATGTGAACCTTCCACCGGGGTTTCGATTTTATCCAACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGGAACTTGATGGTAGAGCGTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGGAGAACACAGAGTAGGGTGACTGAGAATGGATATTGGAAAGCAACGGGAATGGAAGAACCAGTGATGACAAGCTCAACCAACAAGAGAGTTGGCATCAAGAAATACTTTGTTTTTCATCTTGGTGAATCCCCTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCCGATTATTCTGCTTCCTCTAGCAGATCCTCCAAAAGAAAATCAGATTATAGTAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGAGATGATGATGATGGAACGGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTCGATGATCTTGATGAAATAAGCTTACCAAATTAA 558 0.4122 MGDNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGRALAEGNQWYYYSRRTQSRVTENGYWKATGMEEPVMTSSTNKRVGIKKYFVFHLGESPSAIKTNWIMQEYCLSDYSASSSRSSKRKSDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0567 185 PANTHER NAC TRANSCRIPTION FACTOR 56 5 182 - -
Ahy10g0567 185 Gene3D NAC domain 17 159 IPR036093 GO:0003677|GO:0006355
Ahy10g0567 185 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
Ahy10g0567 185 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 182 - -
Ahy10g0567 185 SUPERFAMILY NAC domain 5 154 IPR036093 GO:0003677|GO:0006355
Ahy10g0567 185 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0567 Ahy-Chr10 5667741 5669291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0567 1 170 NAC Transcription Factor Family AT1G61110 41.053 1.16e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy10g0567 NAM 4.10E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0567 - - gmx:100170712 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0839 20 10819787 10821093 Ahy10g0567 10 5667741 5669291 hybridization
Ahy13g4170 13 141206937 141208185 Ahy10g0567 10 5667741 5669291 PCT
Ahy3g3894 3 138316227 138320950 Ahy10g0567 10 5667741 5669291 PCT
Ahy10g0567 10 5667741 5669291 Ahy13g4170 13 141206937 141208185 PCT
Ahy10g0567 10 5667741 5669291 Ahy3g3894 3 138316227 138320950 PCT