Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0539 ATGTCTCACTTTGGAAGGTCAGGTCCACCAGACATTAGCGACACATACTCCCTTCTCGTTCTCAACATCACCTTCCGTACAACCGCCGACGACCTCTTCCCTCTCTTCCACAAGTACGGCGACGTCGTCGACATTTTCATTCCCAAGGACCGCCGCACCGGCGACTCCAGGGGCTTCGCATTTGTTCGCTACAAGTATGCCGACGAGGCTCAAAAGGCTGTCGAGCGCCTCGACGGCAGGGTCGTCGACGGCCGCGAAATCACCGTCCAGTTCGCCAAGTACGGTCCCAACGCCGAGCGCATCCACAAAGGTAGGATTGTCGAATCTGCTCCCAGATCTAAGCGCAGCCGCAGTCCCAGGAGAAGGTATCGTGATGATGATTACAGAGAGAAGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTACGATAGGTATGAGCGTGACAGGCACCGTGGCAGGGACAGGGATTATCGTCGCCGGAGCCGGAGTCGGAGTGCCAGTCCGGACAAGGGTCGTGGAAGGGGACGCTATGATGATGATGACCGCCCTATCCGTAGTATAAGCCGTAGCCGGAGTCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCGTAGATAGCCGCTCTCCTGCTAGGCGCAGCCCAAGTCCTCAAAGGAGTCCATCCCCTAGGACAAGTGCTTCCCCAAGGAAGAAGAGCCCTAGGGGTGAAAGCCCTAGGACTCGCAATGGACACTCCCCTACACCTGTCTCGCCACGTGGTCGTCCTGATGCTTCCCGTAGTCCATCACCTAGAAATTCTGATGGTGATGCATGA 810 0.5778 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFHKYGDVVDIFIPKDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAERIHKGRIVESAPRSKRSRSPRRRYRDDDYREKDYRRRSRSRSYDRYERDRHRGRDRDYRRRSRSRSASPDKGRGRGRYDDDDRPIRSISRSRSRSRSRSRSRSVDSRSPARRSPSPQRSPSPRTSASPRKKSPRGESPRTRNGHSPTPVSPRGRPDASRSPSPRNSDGDA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0539 269 MobiDBLite consensus disorder prediction 102 188 - -
Ahy10g0539 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Ahy10g0539 269 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Ahy10g0539 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Ahy10g0539 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Ahy10g0539 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Ahy10g0539 269 Gene3D - 4 103 IPR012677 -
Ahy10g0539 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Ahy10g0539 269 MobiDBLite consensus disorder prediction 102 269 - -
Ahy10g0539 269 MobiDBLite consensus disorder prediction 207 227 - -
Ahy10g0539 269 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0539 Ahy-Chr10 5333520 5336336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0539 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.250 9.95e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0539 K12891 - pop:18096633 247.284