Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0508 ATGGTGTTTCACCATCGCAGAAAACTCATGCCAGAAATCTGCGAGTCCATCTGCAAAGTGGAGAAGAATTGTTCTTCAAACTGTGAGGAATGCCTCAAACTCTGCATCACCAACCCCCAATACTACTATTATTCCCAACCACCGCCACCGATTCCTCCTCTCCCCTTAGACGATACATCAGATCATGGAAAAAGCCACGCGCTCTCGCCCTACTTGGTCCTTGCTCTCTCCGTTATCGGAGCTGCTTTCTTCGTTGTTATTTGCTGTGCAATCTTCGCGAGGATCTTCAGAAGGAGGAGAAGATCCTTATCGCCACCGTTGAGTCTTCGAACACAGGATAATACGCGTGATGATTTCTTCGTTGATGAGGAGCACGGTCCTGTGGTGGACCACCCGATCTGGTACATCCGTACACCCGGTCTTCAAGAATCGATTATCAACGCAATCGCTGTTTGTAGGTATAAGAGAGGTGAGGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTCAAGAAGATGAGAGTGTTAGATTATTGCCAAAGTGTAACCACGCTTTTCATTTGCCTTGTATTGATACATGGCTTAGGTCACACACCAATTGTCCTATGTGTAGAGCTCCAATTGTTTCCAACAACACTCTTAGGGTTCCATCTATGCAGCATCATAATCATAATCTTAATGTTCTTGATTCAACTTCAAGTTCAGGTTCAAGTTCAGGTTCAGGTTCAGGTTCCTTGGAGATGAGATCTGTGGAAAATATTAACAATGGAAGAAGCCTTAGAGGAATGGAAAATACTCAAAATATTGGCTTTGAATTGAGGAACAGGGAAGAGGATGAAGAAGGAGAAGAACAAGGCCAATTGGGAGGTGAAAGAGTACTAAGCATGATTAGGCCAAGGAGATCTGTTTCTCTGGATTCTTCTTCTGTTGCAGATATTGCTCTTGCTGCATCTGCATTTGTTCTATCTGCGGATTCGGATTCCGATTCGAATAGAGTTCTTGGGGATGAGACTGAGAGTGAACGAATTGGTTCAAAGAGGGTTAATGTTAATGTTAATGTTAATGGAAATGAGAATGAGAATGGGGCAAGTAGTTCAAAAGGGAGAGGAGGAGGGAGAGGGAGAAGCTCTTCTTTCAGGATAAGGTATCTGCATAGTGTTGTTCCTAGTTCAATGAAGAGGTCACGTTCCTTCAATGGTAAATACCTTGTGTCTTCTTTGTATAGCCGCAGCCAAACTCAGAGGAAGCAAAATGCTAATAATCTGAGAAGCTTTTAA 1287 0.4336 MVFHHRRKLMPEICESICKVEKNCSSNCEECLKLCITNPQYYYYSQPPPPIPPLPLDDTSDHGKSHALSPYLVLALSVIGAAFFVVICCAIFARIFRRRRRSLSPPLSLRTQDNTRDDFFVDEEHGPVVDHPIWYIRTPGLQESIINAIAVCRYKRGEGLIEGTECSVCLSEFQEDESVRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVSNNTLRVPSMQHHNHNLNVLDSTSSSGSSSGSGSGSLEMRSVENINNGRSLRGMENTQNIGFELRNREEDEEGEEQGQLGGERVLSMIRPRRSVSLDSSSVADIALAASAFVLSADSDSDSNRVLGDETESERIGSKRVNVNVNVNGNENENGASSSKGRGGGRGRSSSFRIRYLHSVVPSSMKRSRSFNGKYLVSSLYSRSQTQRKQNANNLRSF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0508 428 SMART FANCL_C_2 162 215 - -
Ahy10g0508 428 SMART ring_2 166 207 IPR001841 -
Ahy10g0508 428 MobiDBLite consensus disorder prediction 228 251 - -
Ahy10g0508 428 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 415 - -
Ahy10g0508 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 216 IPR013083 -
Ahy10g0508 428 MobiDBLite consensus disorder prediction 355 379 - -
Ahy10g0508 428 SUPERFAMILY RING/U-box 160 214 - -
Ahy10g0508 428 MobiDBLite consensus disorder prediction 276 295 - -
Ahy10g0508 428 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Ahy10g0508 428 Pfam Ring finger domain 165 208 IPR001841 -
Ahy10g0508 428 MobiDBLite consensus disorder prediction 355 375 - -
Ahy10g0508 428 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 415 IPR044675 -
Ahy10g0508 428 CDD RING-H2_PA-TM-RING 165 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0508 Ahy-Chr10 5058133 5059779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0508 54 212 C3H Transcription Factor Family AT1G72220 49.068 1.79e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0508 - - adu:107468728 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0784 20 9997045 9998759 Ahy10g0508 10 5058133 5059779 hybridization