Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0495 ATGACGAAACATAAGATAGAAATAAAGAAGATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGAAGAAGTCTGTTCAAGAAGGCCGGGGAGCTTTCAACTCTGTGTGATGCAGAGGTGGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCTAGTTCAAGTGTGGAACAGGTAGTAGAAATGCACAAAAATATGCATTCAAGCATCGACAAATCATCATATCACCCTCCAATGGAATTGCAAATGCGCAATGAAGTGGCAGATAAGACTCATGAATTAAGGCAGTTAAATGGAGAAGAGCTTCAAGAATTAAAATTTCAAGAACTAATGAAACTTGAAGAACGTCTACTCAAAGGTCTGACCCGCGTTTTAAAAGCTAAGGGAGTGGATCTAATGCAAGAGAATAAGAAATTGCTGCAGATTGTTGATGAAAAAGAACAAGCATGA 468 0.3996 MTKHKIEIKKIENIAARQVAFSKRRRSLFKKAGELSTLCDAEVALLVFSATGKLFQHSSSSVEQVVEMHKNMHSSIDKSSYHPPMELQMRNEVADKTHELRQLNGEELQELKFQELMKLEERLLKGLTRVLKAKGVDLMQENKKLLQIVDEKEQA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0495 155 CDD MADS_MEF2_like 5 75 IPR033896 GO:0000977|GO:0045944
Ahy10g0495 155 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Ahy10g0495 155 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 145 - -
Ahy10g0495 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy10g0495 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Ahy10g0495 155 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Ahy10g0495 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy10g0495 155 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 145 - -
Ahy10g0495 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy10g0495 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy10g0495 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0495 Ahy-Chr10 4940712 4947580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0495 1 151 MADS-box Gene Family AT2G22540 51.220 3.16e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy10g0495 SRF-TF 5.00E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0495 - - ahf:112784740 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0769 20 9844771 9868590 Ahy10g0495 10 4940712 4947580 hybridization