Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0494 ATGTCAAAACAGAAGATGGAGATAAAGAAGATAGAGAAGAATGCATCAAGGCAAGCCACCTTTAGTAAGAGGAAGAGAGGGATTTTCAAGAAGGCTAAGGAGCTTTCAACTCTTTGTGATGCTGACTTGGCTCTCATTGTCTTTTCTCCTTCTGGCAAGCTCTTCGATTTCGCTTCCTCAAGTGTGCAGGAAGTAACTGAAAGATATCATATGCAAACAAGCATTTACAGATCACAAGACCAACAGTCTCATGAGTTTCAACTTGAGAAGGACACCTACTACCTGAAGTGCAAGGAACTCACAGATAAGACTATTGGACTCAGGCACTTGAATGGAGAGGAGCTGCAAGGATTGAAAATTCATGAACTACAAAAACTAGAGAGAGTGTTAGAAAAGGGTTTGGCTCGTGTTTCAAAAGAAAAGGATCAAAGAAATCTTAAAGATATTATTGAGATGAAGAAAAGGGGACTTCAAATGGTGCAAGACAACCATCGACTGAAAAAGATGAGAAGTCAAGCAAACAGCCAAGGGCAATCATCAAAGTCAAACTCTGTTGAAGAGTCAGATAACCGTGATCATGATGCTCCTAATCTCAACTTGGGGCTTCCAATGTTCGAATGA 621 0.4042 MSKQKMEIKKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFASSSVQEVTERYHMQTSIYRSQDQQSHEFQLEKDTYYLKCKELTDKTIGLRHLNGEELQGLKIHELQKLERVLEKGLARVSKEKDQRNLKDIIEMKKRGLQMVQDNHRLKKMRSQANSQGQSSKSNSVEESDNRDHDAPNLNLGLPMFE* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0494 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Ahy10g0494 206 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Ahy10g0494 206 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Ahy10g0494 206 Coils Coil 123 143 - -
Ahy10g0494 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy10g0494 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy10g0494 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy10g0494 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy10g0494 206 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Ahy10g0494 206 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g0494 206 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 188 - -
Ahy10g0494 206 MobiDBLite consensus disorder prediction 167 206 - -
Ahy10g0494 206 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g0494 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy10g0494 206 MobiDBLite consensus disorder prediction 170 184 - -
Ahy10g0494 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0494 Ahy-Chr10 4915885 4922566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0494 1 172 MADS-box Gene Family AT2G22540 49.133 1.07e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy10g0494 K-box 2.30E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0494 - - ahf:112786765 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0768 20 9800347 9808288 Ahy10g0494 10 4915885 4922566 hybridization