Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0449 ATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTACTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATCTTCTCTCCTTTGTTGACAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAGTAGTAGTCCTAACAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATCATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAAAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCACTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAATAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTCAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGCAATTTTGCCCTTGATATAACCATCATTGCTCAGATGGATATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTCAGCGTTTTCAACTTTCATGTGA 1062 0.3785 MEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTTTIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNLLSFVDNTNHHHHQLGLVMKPKVEIMSSSPNNIDTQGTTLLGNNNNHHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLIRVHCEKKKGVIENTIIQIEKLHLKVINSSVLTFGNFALDITIIAQMDMEFSMTVKELVKNLRSAFSTFM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0449 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 240 IPR036638 GO:0046983
Ahy10g0449 353 Coils Coil 217 244 - -
Ahy10g0449 353 SMART finulus 184 233 IPR011598 GO:0046983
Ahy10g0449 353 Pfam Helix-loop-helix DNA-binding domain 183 228 IPR011598 GO:0046983
Ahy10g0449 353 Gene3D - 177 251 IPR036638 GO:0046983
Ahy10g0449 353 CDD bHLH_AtNAI1_like 182 253 - -
Ahy10g0449 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Ahy10g0449 353 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 352 - -
Ahy10g0449 353 PANTHER BHLH TRANSCRIPTION FACTOR 6 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0449 Ahy-Chr10 4398605 4401408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0449 181 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.444 1.57e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy10g0449 HLH 6.90E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0449 - - aip:107624263 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0649 20 7061920 7065044 Ahy10g0449 10 4398605 4401408 hybridization
Ahy3g2943 3 125864804 125868253 Ahy10g0449 10 4398605 4401408 PCT
Ahy10g0449 10 4398605 4401408 Ahy3g2943 3 125864804 125868253 PCT