Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0388 ATGACGAATTCTAACGAGGTAGAGAATCACAGAAACAGCGTCGTCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAAGTCCTCCTCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTCACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCGCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTGTATTCCCGCCCTAGGCAGATGTGCGTCACGTGCACGGATGAAGATAGAGTGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGAAACCTTTCACGTGCAATAGAATACTTTGCAGATGTGGACATGTCTTCTGCTACGGCTGTGGCGGTTCCACCTGTGAATTCTGTGTCACTGCTGAATTAAGCCGTCCCGCCTGCTGTCTTCTATCATCGACTATTGTTCTGTCAATTGTATTTGGATTTATCATTCTTTTTCTATGTTTGGATGAAGGTGGATACTACAATGAAGATGGCATAATTGTCTTCATATGA 729 0.4719 MTNSNEVENHRNSVVVATKQTKKINREEKGKSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYSRPRQMCVTCTDEDRVMMKLAERNGWKRCPKCRFYVEKKPFTCNRILCRCGHVFCYGCGGSTCEFCVTAELSRPACCLLSSTIVLSIVFGFIILFLCLDEGGYYNEDGIIVFI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0388 242 SUPERFAMILY RING/U-box 143 191 - -
Ahy10g0388 242 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Ahy10g0388 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Ahy10g0388 242 SUPERFAMILY RING/U-box 37 117 - -
Ahy10g0388 242 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 140 192 - -
Ahy10g0388 242 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 140 192 IPR031127 GO:0004842|GO:0016567
Ahy10g0388 242 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 127 IPR031127 GO:0004842|GO:0016567
Ahy10g0388 242 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 127 - -
Ahy10g0388 242 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Ahy10g0388 242 ProSiteProfiles TRIAD supradomain profile. 36 242 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0388 Ahy-Chr10 3735097 3735825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0388 33 191 ARIADNE family AT3G27710 22.388 5.01e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0388 K11975 - twl:120005643 156.762