Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0341 ATGAATGACCTGTTTTCAGGTTCCTTCAGAAAATACAGCACTGACCTGAAGGAGGAAAGGCAGGTTGATGATGTGGAGGCTGGAAGGGAAAGCCTAAATCTGGAGAAATTCTTTGAAGAAGTGGAGGGTGTAAAAGATGAGATGAAAGTGGTTGAGAGCCTCTGCAGAAAATTGCAAGAAGCCAATGAAGAAAGCAAAACCATTCATGATGCCAAAACCGTTAAGGATCTTCGAGCTCGGATGGACAAAGATGTTGTGCAGGTCCTCAAGCATGTTAAGATCATCAAAACCAAGCTTGAATCTCTACAGCGTTCCAACGCAGCGAATCGAAACGTTCCTGGCTGTGGTCCTGGTTCTTCTGCAGACAGAACCAGGACTTCAGTGGTTAGTGGATTAGGGAAGAAGCTAAAGGACATAATGGACGATTTTCAAGGTTTGAGAGCAAAGATGCAACATGAGTACAAGGAAACCATTGAACGCAGGTACTTCACAATCACAGGGGAGAAGGCAGATGAAGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAAAATTTGGTACAGAAAGCGATTCGAGAACAAGGTAGGGGTCAGATAATGGACACCATATCAGAAATTCAAGAAAGGCATGATGCTGTAAAGGAATTTGAGAAGAATTTGATAGAGTTGCATCAGGTGTTCTTGGACATGGCAGCATTGGTAGAGTCTCAGGGGGAACAGCTTAATAACATAGAGAGTCATGTAGCGCATGCAAGCTCATTCGTTACTCGCGGTGTTTCTCAGCTTCAGGAAGCTAGAGATTATCAAACCAACTCTAGGAAGTGGTATTGCTATGCCATCATTCTTGCTATTCTCCTCATCCTTTTACTCTTGGCTCCTCTCTTGTTAAATCTTTTACCACATTTCAGAAGAAGGTGA 921 0.4311 MNDLFSGSFRKYSTDLKEERQVDDVEAGRESLNLEKFFEEVEGVKDEMKVVESLCRKLQEANEESKTIHDAKTVKDLRARMDKDVVQVLKHVKIIKTKLESLQRSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDIMDDFQGLRAKMQHEYKETIERRYFTITGEKADEETIENLISSGESENLVQKAIREQGRGQIMDTISEIQERHDAVKEFEKNLIELHQVFLDMAALVESQGEQLNNIESHVAHASSFVTRGVSQLQEARDYQTNSRKWYCYAIILAILLILLLLAPLLLNLLPHFRRR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0341 306 PANTHER SYNTAXIN 11 295 IPR045242 -
Ahy10g0341 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Ahy10g0341 306 CDD SynN 34 191 IPR006011 GO:0016020
Ahy10g0341 306 Gene3D - 197 296 - -
Ahy10g0341 306 PANTHER SYNTAXIN-124-RELATED 11 295 - -
Ahy10g0341 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Ahy10g0341 306 Gene3D - 34 161 - -
Ahy10g0341 306 MobiDBLite consensus disorder prediction 108 127 - -
Ahy10g0341 306 Coils Coil 41 64 - -
Ahy10g0341 306 CDD SNARE_syntaxin1-like 203 265 - -
Ahy10g0341 306 Pfam SNARE domain 240 292 IPR000727 -
Ahy10g0341 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Ahy10g0341 306 SMART tSNARE_6 199 266 IPR000727 -
Ahy10g0341 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0341 Ahy-Chr10 3110924 3112113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0341 1 303 SNARE and Associated Proteins AT1G61290 73.597 1.05e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0341 K08486 - gmx:100818999 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0525 20 5424429 5425522 Ahy10g0341 10 3110924 3112113 hybridization
Ahy13g3269 13 129533805 129535397 Ahy10g0341 10 3110924 3112113 PCT
Ahy3g3001 3 126876370 126877830 Ahy10g0341 10 3110924 3112113 PCT
Ahy10g0341 10 3110924 3112113 Ahy13g3269 13 129533805 129535397 PCT
Ahy10g0341 10 3110924 3112113 Ahy3g3001 3 126876370 126877830 PCT