Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0313 ATGGATAACATTATAGTAGAGAGTACTACTACTTTGGGTTATATATATATAATAATGCTTTTTCTATCATTGAAACATGAAATAGTAGCAGCAGGAGATAACAACAGTGCCATTGATGACCTTGTGACTAACTTGCCTGGCCAGCCTCTTGTAGATTTCAAGCACTATGCTGGTTATGTCACGGTTAGTGATGACACCAATAATGGAGGAAGAGCACTCTTCTATTGGTTTTTTGAAGCCATCACCAACCCTCAAGATAAACCATTGGTGCTGTGGCTCAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACAGATGGCAAGGGCCTTAAATTTAATAACTACTCTTGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTAGGCTTTTCCTACTCAAATTCAACTATGGTCTATGAAAATCTGGATGATGATATCACAGCTAATGATGCTTACAATTTTCTGCACAATTGGTTTCTCAAGTTTCCATCATATAGAACAAGCACATTTTATATTGCAGGAGAGAGCTATGCAGGGAAGTACGTACCTGAGCTAGCAGAACTGATATATGATAGGAAAGATGACCCTTCCCTTCATATTAATCTCAAGGGTATTTTGTTGGGGAATCCTGAAACATCTGATCCCGAAGACTTGTTAGGGCAAGTTGATTACGCTTGGAGCCATGCAGTGATATCTGATGAAACCTACAAAACAATAAGAAGAAGTTGTAACTTCAGTGATCCATATAAAAACAAAGATTGTGGTGATGGACTTGATGAACTTTATAAGCAATACGACCAAATTGATATTTATAGCCTCTACACCTCTGTTTGTTTTGCCACCACAGCGCTTTCAAATCATCAAATCAAGCACTCATCTAGGAACAAGATGCGTAGAATGATGGGAGGTTTTGATCCATGCTTGGATAATTATGCCAGAGCCTTTTACAATAGAGCAGATGTTCAGAAAGCTCTCCATGCCAGTGATGGTCTCATTCTCAAGAATTGGACTATTTGCAACAACGATATATTCAATAGTTGGAATTGGAACAAATCAAAGGCCTCTGTTATCCCAATATACAGGAAGCTTATTTCAGGAGGACTTAGGATTTGGGTTTATAGTGGAGACACAGATGGAAGAGTGCCAGTGCTTTCTACAAGATACAGCTTAAGTATTCTGGGTTTGGGAATCACTAAGCAATGGAGGCCATGGTACCATGAGAAACAGGTTAGTGGGTGGTATCAAGAATACGAGGGTCTCACTTTTGCAACATTTCGAGGAGCTGGCCATGCTGTCCCTTCTTTCAAACCAAGCAATTCACTTGCATTCTTCTCTTCCTTCCTTCTTGGACAATCTCCACCCTCTACTAGATCTACATGA 1428 0.402 MDNIIVESTTTLGYIYIIMLFLSLKHEIVAAGDNNSAIDDLVTNLPGQPLVDFKHYAGYVTVSDDTNNGGRALFYWFFEAITNPQDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNYSWNKEANMLFLESPVGVGFSYSNSTMVYENLDDDITANDAYNFLHNWFLKFPSYRTSTFYIAGESYAGKYVPELAELIYDRKDDPSLHINLKGILLGNPETSDPEDLLGQVDYAWSHAVISDETYKTIRRSCNFSDPYKNKDCGDGLDELYKQYDQIDIYSLYTSVCFATTALSNHQIKHSSRNKMRRMMGGFDPCLDNYARAFYNRADVQKALHASDGLILKNWTICNNDIFNSWNWNKSKASVIPIYRKLISGGLRIWVYSGDTDGRVPVLSTRYSLSILGLGITKQWRPWYHEKQVSGWYQEYEGLTFATFRGAGHAVPSFKPSNSLAFFSSFLLGQSPPSTRST* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0313 475 Gene3D - 323 359 - -
Ahy10g0313 475 PANTHER CARBOXYPEPTIDASE 33 469 - -
Ahy10g0313 475 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Ahy10g0313 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Ahy10g0313 475 Pfam Serine carboxypeptidase 47 464 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 469 IPR001563 GO:0004185|GO:0006508
Ahy10g0313 475 SUPERFAMILY alpha/beta-Hydrolases 39 468 IPR029058 -
Ahy10g0313 475 Gene3D - 372 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0313 Ahy-Chr10 2885192 2889112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0313 307 467 Calmodulin-binding Proteins AT2G22960 30.000 1.77e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0498 20 5084519 5088536 Ahy10g0313 10 2885192 2889112 hybridization
Ahy13g3291 13 129783738 129786359 Ahy10g0313 10 2885192 2889112 PCT
Ahy3g3029 3 127236187 127238608 Ahy10g0313 10 2885192 2889112 PCT
Ahy10g0313 10 2885192 2889112 Ahy13g3291 13 129783738 129786359 PCT
Ahy10g0313 10 2885192 2889112 Ahy3g3029 3 127236187 127238608 PCT