Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0292 ATGTCTGACATCGAAAATCATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGCGAATTTCTCGTGGATCTGCTTATGAAAGTTCACGGATGACAAGGCAAGATGATGAAAGGAAAACCTTTCATGACCGCCATCGCAGAGACCACAAGGTTGGAAGGTTTATGGGGAGGGGTAAATATGACAGTTATAATGGGCACAAGAAAAGTGATTATGATAGGCATAATGACCGTGTTTGCGATGGAGAAACAAAGCACAAATATGGAGCGCATTCAAAGAGATCGAGGAGGAAATCAAGATCAAGATCACGGTCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGATGGGAACACTTTCTGTAATGCACATTCAACCTATGACACAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGATTCCTCCGTTGACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGGTGTTGCTGTAAGGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAAATACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAATTGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGCCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTCGGCGGGTCAAATATTCCTTGGGCAGAAAGAGTGCCAACTACAATTGATGAAACTCCCACTAAAGTGTTATGTTTGACAAAGGCTGTTACTTCTGATCAGTTGAGGGATGATGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCCGCAAATTTGGAGCTTTGGTGAATGTTATTATTCCGCGACCGAATCCTGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCTGGTTGTTCCGCCGCAAAAAATGCTCTACATGGTAGGAAATTTGGTGGCAATGTTGTGACTGCCGTTTATTATTCTGAAGAGAAGTATCACAGTATGGACTATGGAGTATGA 1578 0.4423 MSDIENHASLRGRSSPDKRISRGSAYESSRMTRQDDERKTFHDRHRRDHKVGRFMGRGKYDSYNGHKKSDYDRHNDRVCDGETKHKYGAHSKRSRRKSRSRSRSRSPSRSECKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQMGTLSVMHIQPMTQQATRHARRVYVGGIPPLTNEQTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQGVAVRVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQILESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKLGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKIALEVGGSNIPWAERVPTTIDETPTKVLCLTKAVTSDQLRDDEEYEEILEDMRDECRKFGALVNVIIPRPNPGGELPPGIGKVFLEYSDNAGCSAAKNALHGRKFGGNVVTAVYYSEEKYHSMDYGV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0292 525 Gene3D - 172 273 IPR012677 -
Ahy10g0292 525 SUPERFAMILY RNA-binding domain, RBD 298 517 IPR035979 GO:0003676
Ahy10g0292 525 SUPERFAMILY RNA-binding domain, RBD 91 257 IPR035979 GO:0003676
Ahy10g0292 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 260 IPR000504 GO:0003723
Ahy10g0292 525 MobiDBLite consensus disorder prediction 1 43 - -
Ahy10g0292 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Ahy10g0292 525 CDD RRM1_U2AF65 176 258 - -
Ahy10g0292 525 CDD RRM3_U2AF65 423 511 - -
Ahy10g0292 525 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 524 - -
Ahy10g0292 525 CDD RRM2_U2AF65 297 373 - -
Ahy10g0292 525 MobiDBLite consensus disorder prediction 88 103 - -
Ahy10g0292 525 Gene3D - 419 523 IPR012677 -
Ahy10g0292 525 SMART rrm1_1 178 256 IPR000504 GO:0003723
Ahy10g0292 525 SMART rrm1_1 298 371 IPR000504 GO:0003723
Ahy10g0292 525 SMART rrm1_1 425 511 IPR000504 GO:0003723
Ahy10g0292 525 MobiDBLite consensus disorder prediction 54 87 - -
Ahy10g0292 525 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 28 523 IPR006529 GO:0003723|GO:0005634|GO:0006397
Ahy10g0292 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 368 IPR000504 GO:0003723
Ahy10g0292 525 Gene3D - 292 393 IPR012677 -
Ahy10g0292 525 PANTHER RNA-BINDING PROTEIN 1 524 - -
Ahy10g0292 525 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0292 Ahy-Chr10 2647442 2654306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0292 299 439 Eukaryotic Initiation Factors Gene Family AT1G49760 26.950 2.34e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0292 K12837 - vvi:100243034 664.84