Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy10g0279 | ATGGCAATAGATCACTACTTCTCTCAGGAATGGAAAACCATCCCAAATTCGGCAGCCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGAGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCATTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAATCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTACCATGAATCCAGGACCCCAATACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAACTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA | 702 | 0.4658 | MAIDHYFSQEWKTIPNSAAETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGATMNPGPQYPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTTNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF* | 234 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy10g0279 | 233 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 76 | IPR018957 | GO:0046872 | |
Ahy10g0279 | 233 | MobiDBLite | consensus disorder prediction | 106 | 128 | - | - | |
Ahy10g0279 | 233 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 77 | IPR001841 | - | |
Ahy10g0279 | 233 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 233 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Ahy10g0279 | 233 | CDD | RING-HC_AtRMA_like | 28 | 78 | - | - | |
Ahy10g0279 | 233 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Ahy10g0279 | 233 | MobiDBLite | consensus disorder prediction | 114 | 128 | - | - | |
Ahy10g0279 | 233 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA3 | 2 | 233 | - | - | |
Ahy10g0279 | 233 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 127 | IPR013083 | - | |
Ahy10g0279 | 233 | SUPERFAMILY | RING/U-box | 26 | 89 | - | - | |
Ahy10g0279 | 233 | SMART | ring_2 | 30 | 76 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy10g0279 | Ahy-Chr10 | 2520374 | 2522350 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy10g0279 | 13 | 219 | C3H Transcription Factor Family | AT4G27470 | 42.202 | 2.02e-44 | 147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy10g0279 | K10666 | - | gmx:100816864 | 318.161 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy20g0462 | 20 | 4683220 | 4685302 | Ahy10g0279 | 10 | 2520374 | 2522350 | hybridization | |
Ahy13g3338 | 13 | 130410657 | 130412397 | Ahy10g0279 | 10 | 2520374 | 2522350 | PCT | |
Ahy3g3070 | 3 | 127918213 | 127919941 | Ahy10g0279 | 10 | 2520374 | 2522350 | PCT | |
Ahy10g0279 | 10 | 2520374 | 2522350 | Ahy13g3338 | 13 | 130410657 | 130412397 | PCT | |
Ahy10g0279 | 10 | 2520374 | 2522350 | Ahy3g3070 | 3 | 127918213 | 127919941 | PCT |