Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0249 ATGGCATCTTCTTCTTCTTCTTCAGCTTCTCGTGAGGGACACTACAGAGGGGTTAGGAAGAGGCCATGGGGACGTTACGCTGCTGAGATACGCGATCCTTGGAAGAAGACACGTGTATGGCTTGGTACATTCGATACTCCTGAAGAAGCCGCCCTAGCTTACGACGGTGCCGCGCGTTCTCTCCGTGGTGCTAAAGCCAAGACTAACTTCCCCCCGGCTCCGGTCGCCGCCGCCGGAGGAATCTGTCTCGACCTCAACGTTAACACTCCTAACTCTGATCACCATCGCTGGCCCTCCGTACCGGTTCGCGCCGGCGTTGGCGGTGGTGGAATCTTCGGCGAGTTTCTCCACACTCGCGTTCTCAAGGACGTTGATCTGGCTCATCAACCGCATCAGCCGCCTCCGCCGCATCCGATTCATCATGCGGCGGTGTTAGCAGCTAATCACCACAGACGCGGCGAGGTGACAGTAGCGGTTGCCGGAGGAGGAGTGGAGCAGGTGGCGGGGAGCAGTTCAACGGCGTCGTATCTCGGGCTTGTTCGGCGCGGGATCCCGATCGATCTGAACGAGCCTCCACCTTTGTGGCTTTGA 591 0.5888 MASSSSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAAAGGICLDLNVNTPNSDHHRWPSVPVRAGVGGGGIFGEFLHTRVLKDVDLAHQPHQPPPPHPIHHAAVLAANHHRRGEVTVAVAGGGVEQVAGSSSTASYLGLVRRGIPIDLNEPPPLWL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0249 196 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 130 - -
Ahy10g0249 196 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Ahy10g0249 196 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Ahy10g0249 196 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Ahy10g0249 196 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Ahy10g0249 196 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Ahy10g0249 196 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Ahy10g0249 196 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Ahy10g0249 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 130 - -
Ahy10g0249 196 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0249 Ahy-Chr10 2237170 2238986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0249 5 196 AP2-EREBP Transcription Factor Family AT1G28360 44.498 6.48e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy10g0249 AP2 3.30E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0249 - - aip:107624305 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0427 20 4317302 4319174 Ahy10g0249 10 2237170 2238986 hybridization