Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0223 ATGGGGTTGATTGATCTCAACACCACAGAGGAAGATGAAGCACAAACACCATCATCCGCATCCACAGGCTCTGCTTCATCACCTTCTCACTCTGGTATAAGCACTTCAGCTTCAGCTTTGGCTCCACCTTCTTCTTCTTCTTCTGTGTGCTTGGAGCTATGGCACGCTTGTGCTGGCCCTATGATCTCTCTCCCAAAGAAAGGAAGCGTGGTTGTGTACTTACCACAAGGCCACTTTGAACAGGCTCAGGATTTTCCCGTCACTGCCTATAACATCCCACCTCATGTCTGCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGCGGCATGGGGTAGTTGATGTTGATGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTTTGCAAGACTCTTACTGCTTCTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGGCCTTCACAAGAGCTTGTGGCGAAGGATTTGCATGGCCTTGAATGGAGGTTTAGACATATATACAGAGGGCAGCCACGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTCCTTAGGGGTGACGATGGAGAATTAAGACTAGGGATTCGTAGGGCTGCTCAGTTGAAGAATGGTGGTATCTTTGCCACTCCTTCTATTCAGCAACTGAATCCTGGCTCAGTCATGAATATTATTAATGCGTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGTGAGCTCCAAGGAATTCATCATACCGCCTCACAAATTTTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCGAAACTGAAGATGCTGCAGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCAGTTAGATGGCCAGGTTCAAAATGGAGATGCCTTCTGGTAAGGTGGGATGATGTTGAAGCAAGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGGCCTGCTCCTACTTCCAATAACTTGATGGCAGCCGGTTTGAAGAGGAGCCGAATTGGATCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTGAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACCCCTTTTGATGGTATTAATTCTCAGAGTCCAAGGTTATCAGAGTTAGGGAGGTGTTATCCTGGTTCTATTGGTTCTGGGACATCGGTTGTAGGAAGTAATATCAGAATCCCTCAAGCCGGCTCTGATTTTTCCTACAACAATGGCACAGGCTTTGGGGAATCATTCCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCTTGTCTTTTGATGAGGCTCGCACAAATGGTCGCTTTGGACTTTTTGATGGTTATCATCTGGTTAGCCCCAGAAATGGATGGTCAACCCAGGTGCATGACAATCCATCACATCTGCATGCATCTGTAGCATCAATGCAAGTGTCGTCTCCTTCATCTGTGTTAATGTTCCAGCAAGTGGTTAATCCTCTTTCAAACTCTGATTATGATAAAAAGAGTAGCCAGGAGATAGAGGGTACAGTCCATTACCGACGTCCCTATGCAACTGAAGTGAAAGGTGGAACATTTGCATCGTTCCCAACTGATGAGCCTATTTTCTCTGGAAGAGCTAAGGAAGATATGAACTCCCTTGGCATGTTTAACTTCCATAATCAGTTGGGCACTTCAAAGTCTGTTGAATCAGCATTGGCAATGAGAGAAAGTCAAGAGTTGGCATCTTCGTGTAAAAGTAGCTGCAGACTCTTCGGATTCTCTTTAACCGAGGACCCTCACATTGCAAACAAGGAGGCTGACCGACCTTTGATCACTCGGCAATTGAGTTCAGTCCCTACATTTACTCAACACGCCGAGGATAGTTTTCCTCCCGGCCATTCTCTCAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTGTTGCAGTGTTGA 2205 0.458 MGLIDLNTTEEDEAQTPSSASTGSASSPSHSGISTSASALAPPSSSSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPVTAYNIPPHVCCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDVDGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFATPSIQQLNPGSVMNIINALSSRSAFSVCYNPRVSSKEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEASRHNRVSPWEIEPSGPAPTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGINSQSPRLSELGRCYPGSIGSGTSVVGSNIRIPQAGSDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSFDEARTNGRFGLFDGYHLVSPRNGWSTQVHDNPSHLHASVASMQVSSPSSVLMFQQVVNPLSNSDYDKKSSQEIEGTVHYRRPYATEVKGGTFASFPTDEPIFSGRAKEDMNSLGMFNFHNQLGTSKSVESALAMRESQELASSCKSSCRLFGFSLTEDPHIANKEADRPLITRQLSSVPTFTQHAEDSFPPGHSLRTKAVESNFTKGVLQC* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0223 734 Gene3D - 321 390 - -
Ahy10g0223 734 Gene3D - 155 259 IPR015300 -
Ahy10g0223 734 PANTHER AUXIN RESPONSE FACTOR 40 733 - -
Ahy10g0223 734 MobiDBLite consensus disorder prediction 9 39 - -
Ahy10g0223 734 CDD B3_DNA 155 257 IPR003340 GO:0003677
Ahy10g0223 734 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Ahy10g0223 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 733 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy10g0223 734 Pfam Auxin response factor 285 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy10g0223 734 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Ahy10g0223 734 MobiDBLite consensus disorder prediction 1 39 - -
Ahy10g0223 734 SUPERFAMILY DNA-binding pseudobarrel domain 150 263 IPR015300 -
Ahy10g0223 734 SMART B3_2 157 259 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0223 Ahy-Chr10 1991108 1996507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0223 45 511 B3 DNA Binding Superfamily AT5G60450 49.383 5.11e-145 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy10g0223 B3 3.60E-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0223 K14486 - gmx:100789906 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0404 20 4112047 4116834 Ahy10g0223 10 1991108 1996507 hybridization