LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g0202	ATGGTGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTAGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAAGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATCAAGAACTACTACTCTGAAGGAAACAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGCCAAGAAGCCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAACATTGTGACTCAAGCACTGGACAGAATGAGCAATGGCAAAAGCAGCACAAATACCTTACTAAGAGAAATACAGTCAAGCAAATTTTCTGGTTTAAGTGGCCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGAGTAGTGAATGTGGTTGGGAAGAGTTACAAAGAGTTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAACAAGACAAGATGGTGGTAATGGTAACCATGTTTCAGAATGCTTCAATGCTGTACTTTGGCCTGGGAATTTGCAAAGGACACCAAAGGGATGGAAAATGCCTACTAAACAAAAACCTATGAAAATCGCGGTCCCAGGCAGAACTACATTTTCCAGGTTTGTCAAGGTTGATTATGCCAAGAATCAAAACCTTGATAACTATGATGGATTCTGCATCAAGATTTTTGAGCAGGTGCACAAAATTTTGGGGTATGATCTACCCTATAAGTTCCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGAGTTATGATGCTGTTATTGGGGATATTACGATACTAGAGGAAAGATTGCCATATGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGAAGAATCAGCATGGATGTTCACCAAGCCATTTACCTGGCAACTTTGGACAGTTACAGGAGCCATCTTGATCTATACAATGTTAGTAGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGATCAGCACTGCTCTTTGGTTTACCGTCTCCTCTTTGTTCTTTGCTCACAGTTAG	1143	0.3998	MVIHLFREASNIGLVDKESVWIIPESITNLIDSINKSSISYMEGAIGIKNYYSEGNNKYQDFEAQFQRTFWPRSPEEDNRKPGFFALQAYDSINIVTQALDRMSNGKSSTNTLLREIQSSKFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHATRQDGGNGNHVSECFNAVLWPGNLQRTPKGWKMPTKQKPMKIAVPGRTTFSRFVKVDYAKNQNLDNYDGFCIKIFEQVHKILGYDLPYKFHAINCTYPDLVQLVYNKSYDAVIGDITILEERLPYVDFTVPYAESGLSMLVPAKSEESAWMFTKPFTWQLWTVTGAILIYTMLVVWLLEKEPNPEFHGNWKSQISTALWFTVSSLFFAHS*	381

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy10g0202	380	Pfam	Receptor family ligand binding region	4	148	IPR001828	-
Ahy10g0202	380	SUPERFAMILY	Periplasmic binding protein-like II	185	337	-	-
Ahy10g0202	380	PANTHER	GLUTAMATE RECEPTOR 3.4	1	379	-	-
Ahy10g0202	380	SUPERFAMILY	Periplasmic binding protein-like I	3	201	IPR028082	-
Ahy10g0202	380	Pfam	Bacterial extracellular solute-binding proteins, family 3	235	315	IPR001638	-
Ahy10g0202	380	Gene3D	-	228	304	-	-
Ahy10g0202	380	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	1	379	-	-
Ahy10g0202	380	Gene3D	-	305	316	-	-
Ahy10g0202	380	Gene3D	-	318	380	-	-
Ahy10g0202	380	Gene3D	-	87	213	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g0202	Ahy-Chr10	1872739	1874072	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy10g0202	4	379	Ion Channels	AT2G29120	30.597	1.83e-67	228

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g0202	-		-	ahf:114924593	787.719

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g0388	20	3972288	3976740	Ahy10g0202	10	1872739	1874072	hybridization

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