Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0138 ATGGATCAAGCCGCAAGTGAGGGGAGTGGTGAGGTAATGGATCCTGTTCATGAAAGAGTTGATGATAATTTGAGTCATGAACCTGATGGGGCTGCAATTGATGCAGTAGGTAGGGGTAGCTTGGGTGAGAGAACCACTATAAGTGGAGAAGTTGGAACTTCAGAACAAAAGGGTAAGGATTTGGGATCAGATAAGGAGTTAAAGGTGGAACCTGAGGAAGTTGAGAGTGGGAAGAAGTGTGATTACCAAAAAAACAGTGAAACAATGTCTGAGGTTGATCAAGGAACTAGTTATAATTCAAGCAATTTGGTTAATCAGCAAGTGGTTGAAACCGTGGTTGTAATAGAGGCTGTTCAGAGTGAGTGTGTTAACAGGGACAGTATGAAATTGGAGCTGAAGGTAAATGAATCAGGGTTGAGCAAAGTATCTGTGAGAGCCCCCAAAGGGGTTTCTGAAATGACAGATAAGAATTCTTGTGTGATTGATATAAGGTGCACCAACCACAAACGGTTTAGTGAGAGTTCAGAAGGTGAAAGGATTTGTAGGATTTGCCACCTTGCTTCTGGGAGACCATCAGATGCAACAGCTGTTGGAACTGCCAATGGTGCTACTAGTACTGATTTGATTCAGCTTGGTTGTTCATGTAAGGATGAGCTTGGCATTGCGCATATTCATTGTGCTGAGGCCTGGTTCAAGCTTAAAGGAAACAGATTATGTGAAATATGTGGCGAGATTGCGAAAAACGTGTCGGGTGTTGCTGATGCTGGATTCATGGAAGAGTGGAACGAAGGGAGATTCATGGACCAAGATAACTCATCACGCAGGTTTGGTGGATGTTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTTCCATGGTTTTTTCGTGTAAATATGTTCTAG 927 0.4304 MDQAASEGSGEVMDPVHERVDDNLSHEPDGAAIDAVGRGSLGERTTISGEVGTSEQKGKDLGSDKELKVEPEEVESGKKCDYQKNSETMSEVDQGTSYNSSNLVNQQVVETVVVIEAVQSECVNRDSMKLELKVNESGLSKVSVRAPKGVSEMTDKNSCVIDIRCTNHKRFSESSEGERICRICHLASGRPSDATAVGTANGATSTDLIQLGCSCKDELGIAHIHCAEAWFKLKGNRLCEICGEIAKNVSGVADAGFMEEWNEGRFMDQDNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0138 308 MobiDBLite consensus disorder prediction 57 86 - -
Ahy10g0138 308 ProSiteProfiles Zinc finger RING-CH-type profile. 173 249 IPR011016 GO:0008270
Ahy10g0138 308 MobiDBLite consensus disorder prediction 12 28 - -
Ahy10g0138 308 Pfam RING-variant domain 181 242 IPR011016 GO:0008270
Ahy10g0138 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 253 IPR013083 -
Ahy10g0138 308 PANTHER ZINC FINGER, RING-CH-TYPE 1 308 - -
Ahy10g0138 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 308 - -
Ahy10g0138 308 SUPERFAMILY RING/U-box 176 244 - -
Ahy10g0138 308 MobiDBLite consensus disorder prediction 1 98 - -
Ahy10g0138 308 SMART ringv_2 180 243 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0138 Ahy-Chr10 1352754 1354961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0138 161 307 C3H Transcription Factor Family AT5G05830 40.000 2.47e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0138 - - gmx:100791720 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0326 20 3424893 3427491 Ahy10g0138 10 1352754 1354961 hybridization
Ahy13g4565 13 146024073 146026675 Ahy10g0138 10 1352754 1354961 PCT
Ahy3g4315 3 143178328 143180824 Ahy10g0138 10 1352754 1354961 PCT
Ahy10g0138 10 1352754 1354961 Ahy13g4565 13 146024073 146026675 PCT
Ahy10g0138 10 1352754 1354961 Ahy3g4315 3 143178328 143180824 PCT