Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0093 ATGTCAGATAATAATAACAATAATAACAGAGATGTTGTAATGAGTGTTACCAATGATGAAGATGAGTCAGACACCAAGGTCACTGTGCCTCTTCTGCAAAAGATGGTAGCAGAGGCAGTGGGAACGTTCTTCTTGATATTTGCAGGGTGTGGTTCATTGGTTGTGAACCTCAACAACGACAAGGTGGTGACACTTGCAGGAATCGCAACAGTTTGGGGGCTGCTTGTGATGGTGTTAATATACTCTCTTGGACACATATCTGGTGCTCATTTCAACCCTGCAGTTACCATTGCTCTTGCTTCCATCAACAGGTTCCCTTGGAACCAGGTTCCTGCTTATATCTTCTCTCAAGTTCTTGGATCCACACTTGCAAGTGGTGCTCTCAGACTCTTATTTACGGGCAAGGATAACCAGTTTCCCGGAACCGTTCCATCTGTGACTCACGTTCAAGCTCTCGTTATTGAATTCATAATCACTTTCTTTCTCATGTTCGTCATTTCTGGGGTGGCCACTGATAACCGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACTATTCTACTAAATGTGCTCGTTGCAGGGCCATTAACGGGAGCATCAATGAACCCTGCAAGATCATTGGGACCAGCTATTGTGCACAGTGAATACAGAGGAATATGGGTGTATTTGGTGTCACCCATTGTTGGAGCTGTGGCTGGTGCATGGACCTACAATTTCGTTAGGTACACAAAGAAGCCGGTTCGTGAGATCATCAAGAGTGCCTCTTTCTTCAAGGGGAGTAAATAG 792 0.4508 MSDNNNNNNRDVVMSVTNDEDESDTKVTVPLLQKMVAEAVGTFFLIFAGCGSLVVNLNNDKVVTLAGIATVWGLLVMVLIYSLGHISGAHFNPAVTIALASINRFPWNQVPAYIFSQVLGSTLASGALRLLFTGKDNQFPGTVPSVTHVQALVIEFIITFFLMFVISGVATDNRAIGELAGLAVGSTILLNVLVAGPLTGASMNPARSLGPAIVHSEYRGIWVYLVSPIVGAVAGAWTYNFVRYTKKPVREIIKSASFFKGSK* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0093 263 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 MobiDBLite consensus disorder prediction 1 21 - -
Ahy10g0093 263 CDD MIP 33 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 10 261 - -
Ahy10g0093 263 Gene3D Glycerol uptake facilitator protein. 1 252 IPR023271 -
Ahy10g0093 263 TIGRFAM MIP: MIP family channel proteins 37 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 SUPERFAMILY Aquaporin-like 29 252 IPR023271 -
Ahy10g0093 263 Pfam Major intrinsic protein 28 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy10g0093 263 PANTHER AQUAPORIN NIP2-1 10 261 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0093 Ahy-Chr10 997258 998935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0093 29 260 Major Intrinsic Protein MIP AT5G37820 62.500 6.03e-102 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0283 20 2973063 2974427 Ahy10g0093 10 997258 998935 hybridization
Ahy13g4592 13 146281865 146285183 Ahy10g0093 10 997258 998935 PCT
Ahy3g4339 3 143388314 143392688 Ahy10g0093 10 997258 998935 PCT
Ahy10g0093 10 997258 998935 Ahy13g4592 13 146281865 146285183 PCT
Ahy10g0093 10 997258 998935 Ahy3g4339 3 143388314 143392688 PCT