Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0079 ATGATGGATGAAAGGGTAGGTATAGGTGAAATAAAGAAGATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGTCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAAAAAGCATGTTCAGATTCATCTGGTGCTAGATCTGCTTTCGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAGTCATTGAGCAGTATGAATGTGAGGGACCTCAAAAACCTGGAGAATAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGAGTGTGTTGCCAACTGCTGGACCCACAAACTATGAATCAATGCATCAATCTCATGAACAACATCAGCATCAGCATCAGCATCAGCAGCAGCAATTTGATTCTCGTGGCTACTTTCAAGTCACTGGTTTACAACCCAATAGTCAGTATGCACGCCAAGACCAAATGTCCCTTCAATTAGTCTAA 816 0.4105 MMDERVGIGEIKKMAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGARSAFEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLENKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMSVLPTAGPTNYESMHQSHEQHQHQHQHQQQQFDSRGYFQVTGLQPNSQYARQDQMSLQLV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0079 271 Coils Coil 112 146 - -
Ahy10g0079 271 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 SUPERFAMILY SRF-like 34 105 IPR036879 GO:0003677|GO:0046983
Ahy10g0079 271 Gene3D - 45 111 IPR036879 GO:0003677|GO:0046983
Ahy10g0079 271 MobiDBLite consensus disorder prediction 216 243 - -
Ahy10g0079 271 CDD MADS_MEF2_like 34 108 IPR033896 GO:0000977|GO:0045944
Ahy10g0079 271 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 Coils Coil 156 176 - -
Ahy10g0079 271 ProSiteProfiles K-box domain profile. 119 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g0079 271 Pfam K-box region 119 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g0079 271 PANTHER MADS BOX PROTEIN 27 265 - -
Ahy10g0079 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Ahy10g0079 271 PANTHER AGAMOUSB 27 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0079 Ahy-Chr10 893544 901268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0079 14 271 MADS-box Gene Family AT3G58780 62.921 3.22e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy10g0079 K-box 2.10E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0079 K09264 - gmx:732595 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0267 20 2858321 2866144 Ahy10g0079 10 893544 901268 hybridization
Ahy13g4599 13 146363808 146368011 Ahy10g0079 10 893544 901268 PCT
Ahy10g0079 10 893544 901268 Ahy13g4599 13 146363808 146368011 PCT