Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0055 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAAGAAGGGGAAAAGCGAGTTCTGGACTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCCGCAGTTGGGAGCCGTGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTGGCAGTGTCAACTAATAAGGAAGTGGATGCTCATATCCCCAACTACCCAAGCTTGCCACCCCAACTCATTTGTCAACTCCATAATCTTACTATGCATGCTGATGCTGAGACCGATGAAGTGTATGCACAGATGACCTTACAACCTTTGAATCCTCAAGAGCAAAAGGAGGCGTATCTTCCAGCAGAGTTGGGAAGTCCAAGCAAACAGCCAACAAACTACTTCTGCAAGACTTTGACAGCCAGTGACACAAGCACCCATGGAGGATTCTCTGTTCCTCGCCGAGCAGCAGAGAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTTCGAGGCCAGCCTAAAAGGCATCTACTCACAACTGGATGGAGTGTTTTTGTTAGTGCTAAAAGGCTTGTTGCTGGTGATTCTGTGCTCTTTATCTGGAATGACAAGAACCAGTTGCTTCTTGGCATCCGACGCGCGAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTGTCAAGTGATAGCATGCATTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACCAATAGTCGTTTCACTATTTTCTATAATCCACGTGCTAGTCCATCAGAATTCGTCATACCTCTGGCAAAGTATGTTAAGGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGTTGTTTGAAACTGAGGAGTCCAGTGTGCGACGATATATGGGCACAATAACTGGCATTAGTGACTTGGATGCTGCCAGGTGGCCAAATTCACATTGGCGCTCAGTGAAGGTTGGTTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTCTTTGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTTCCTCTACGCCTTAAACGACCTTGGCCTCCAGGACTACCATCATTCCATGCAGGATTGAAGGACGAAGATTTTGGTATGAGTTCTCCACTGATGTGGCTGCGAGACGCCGACAGGGGTGGTCTTCAGTCTCTAAATTTTCAGGGGATTGGAGTTAGTCCTTGGATGCAGCCGAGGTTTGATCCATCCATGCTGAATATGCAAACAGACATGTATCAAGCTGTGGCTGCGGCTGCACTTCAGGATCCTTCTAAACAGCATCCTTCTTCCTTACTTCAATTTCAGCAGCCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCATTCACAGATATTGCAGCAATCACCACCTCAGCAAGCTTTCCAAATTGATCAAGAGAATCAGTCACAAACTCCAACACATGTTCAACTGCGTCCACAGCACCAGAACTCATTCAATAACCAGCTTCACCATCACAACAACCAGCAACAGCAACCACAGCAGATTTCCAATGCAGTGTCTACAATGTCTCAGTTTGTTTCAAGTTCAGCAACTCAGCCTCTCTCACCACCTGTGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAGCTTTTCAGATTCAAATGGAAACCCTGTCACCACTGCTAATGTTTCTCCTCTGCATAGTATCTTGGGGTCCTTTCCCCAGGACGAAGCATCTCAGCTTTTGAACCTCCCTAGAAGTAGCTCTTGGATTCCTGTTCAAACATCATCAGCAGCATGGCCGTCGAAGCGAGTTGCAGTGGATCCTCTCCTTTCTTCCGGTGCATCTCAGTGCATTCTGCCTCAGGTGGAGCTGCAGAGTAGTATTTCTCAAAATGCAGTTACATTACCACCCTTTCCTGGGAGGGAGTGCTCAATAGACCAAGAAGGAAGCACTGATCCACACAACCATCTTTTATTTGGTGTTAACATAGAGCCTTTAACACTTCTTGTGCATAGCCATGGTGACTCTCCCACCATTCCATTTCAAACTTCTAACTACATGAGTACTGCAGGTGCCGATTCTTCAGGCTTCCTGCATCCCTCAGAAAATATGCCCAACAAAACCTTCGTGAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAACTAGCTCGCATGTTCGGCCTAGAAGGCGAGCTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGCGAGAACGACGTTCTTCTCCTCGGCGATGGCCCGTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTATCACCGCAAGAAGTGCAGCAAATGGGAAACTCCGGCCTCGAGCTCTTGAACTCAGTTCCGGTCCAAAGGCTCTCTAACAGTATCTGTGATGACTATGGGAGCCGAGACTCCAGAAGTTTAAGCACCGGGATAACCACGGTGGGATCATTAGACTACTGA 2571 0.4737 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDEDFGMSSPLMWLRDADRGGLQSLNFQGIGVSPWMQPRFDPSMLNMQTDMYQAVAAAALQDPSKQHPSSLLQFQQPQNFPNRTAALMHSQILQQSPPQQAFQIDQENQSQTPTHVQLRPQHQNSFNNQLHHHNNQQQQPQQISNAVSTMSQFVSSSATQPLSPPVQAISSLCQQQSFSDSNGNPVTTANVSPLHSILGSFPQDEASQLLNLPRSSSWIPVQTSSAAWPSKRVAVDPLLSSGASQCILPQVELQSSISQNAVTLPPFPGRECSIDQEGSTDPHNHLLFGVNIEPLTLLVHSHGDSPTIPFQTSNYMSTAGADSSGFLHPSENMPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPVQRLSNSICDDYGSRDSRSLSTGITTVGSLDY* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0055 856 ProSiteProfiles PB1 domain profile. 724 808 IPR000270 GO:0005515
Ahy10g0055 856 SUPERFAMILY CAD & PB1 domains 717 799 - -
Ahy10g0055 856 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Ahy10g0055 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 837 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy10g0055 856 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy10g0055 856 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy10g0055 856 Gene3D - 125 228 IPR015300 -
Ahy10g0055 856 MobiDBLite consensus disorder prediction 483 538 - -
Ahy10g0055 856 Pfam AUX/IAA family 721 809 IPR033389 -
Ahy10g0055 856 Gene3D - 291 363 - -
Ahy10g0055 856 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy10g0055 856 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ahy10g0055 856 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Ahy10g0055 856 PANTHER AUXIN RESPONSE FACTOR 1 837 - -
Ahy10g0055 856 Gene3D - 720 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0055 Ahy-Chr10 652450 658469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0055 1 480 B3 DNA Binding Superfamily AT1G30330 85.890 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy10g0055 AUX_IAA 3.40E-07 CL0072