Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0040 ATGGGGGAGACTGGGAAACGATATCGCAATCAAAGGGACCATGATGGAAACGGGAAGAATCAAAAGCGGCGTCTGAATGACAAAGTTGAAAGGGGAAATGATGAATTGATTATCTATAGAATACTGTGTCCAGATGGAGTTATTGGGAATGTCATTGGTAAGAATGGAAAAGTCATCAATACAATAAGGCAGGAGACTAGGGCAAAAGTCAAGGTGGTGGATCCATTTCCTGGTGCCAAGGAACGGGTTATAACAATTTACTGCTATGTTAAGCAGAAGGAAGAATTTGAGGTTGATGATGAGCTCAATAATATGCAGCCTTTATGTGCTGCCCAAGATGCTCTTCTCAAGGTTCATTCTGTCATTTCAAATGCCATGGAAGCCGTTGGAGATTCTGAAAAGAAACAGAAGGATAAGGAAGAATGCCAAATCCTTGTTCCATCAAGCCAGTCTGCAAATATCATTGGTAAGGCTGGGGCTACCATTAAAAAATTGAGGGTAAAGACAAGGACAAATATCAAGGTTATTGCAAAGGATAGGGCCAATCCGGCACACTCATGTGCTATGGACTTTGACAATTTTGTGTTGATTACTGGTGAATCAGAAGCTGTTAAAAGAGCATTATTTGCAGTTTCTTCTATTATGTACAAGTTCTCTGCAAAGGAGGACATCCCTCTTGACACGACAGTACCAGAAGTCCCTCCTAGCCTTATTATTCCTTCAGACATTCCAATTTATCCACCTGGCAGACTATACCCAACTTCAGATCCTATTATCCCACCTAGACCTGTTCCTCAAATCCTAGGTGCAACAAATGTACATGATCTGCAAGGTTATGCTGATTCAGGAAATGCATGGTCTCTGTACTCATCTACACTTCCAGCCGTTTCTGATCCTGGTGGTTCACAATCTGAGGAATTAATTGTTAGAATGTTATGCCCCTCTGACAAGATTGGATGTGTCATCGGGAAGGGAGGGAGTATAATTAAAAATATAAGGCAGGCTAGTGGTGCTCGTATCGAGGTTGATGATTCCAAGGCTCGTTACGATGAGTGTTTAATCACTATAACTGCAACAGAGTCATCAAGTGATCTGAAATCCATGGCAGTGGAAGCTGTTTTGCTTCTGCAAGGGACAATAAATGATGAAGATGACACCCCAGTTTCAATCCGGCTCCTAGTTCCATCCAAAGTTATAGGATGTATTATTGGGAAAAGTGGCTCAATCATAAACGAAATTCGGAAGCGGACTAGAGCAGATATTCGAATCTCGAAAAGCAATAAGCCTAAAATTGCTGATGTGAATGACGAACTTGTTGAGGTGGTTGGTGGAGTTGATTGTGTGAGAGATGCACTAATCCAGATTGTACTAAGACTGCGGGATGATGTATTGAAAGAAAGGGACACTGGCCGTAATCCTCCCCCTATAGGTTCTGAATCGTTTTATTCAGGTGGTTCTGTTCTTCCAGTGAGATCTGTGATCCCTCCAGTTCCTGATGTCCCTGCTCCATTGGCTTATGATCAGAGGACTGAAAGTGGAACTGGGCTAAACATGCTTTCTTCCAGCAGCCTGCATGGTTTTGGATCTTATTCGATGGGAGAAAATGGCTATGGATCTATGTCTTCGTATGGCTACAAGCTATATGGAGGTCCGAAAAAGCTTGCATGGAACTTTTTGGTCCATGTTGTTCGTTTATGGAAAGCTCCTTGCCGGTACAATCCTAAGGAGATCAATAGTATTGAAATGGTTCTTCAAGATAGTCAGGGAGGGAGGATCCAAGCTTCGGTCCCTAAGGCGTTGGTACGTAGATGGAATGATAACATTGATGAGTTCAAGATGTATAAAATGTCAAATTTCATTGTTGTAGACAAGAGAGAAAAAACCAAGACATCTATGAATCGGTGGACCTTAAATTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTTCAGAGTTGTTGAATGCTGACAGGATCAATGACTCTCAATTAATAGATATTATGGGTGAAGTGGTTGGAAAGGAAGATCCAAAGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGCGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAACCATTGATAGTGGTCTTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACATTTCTAAGCTACGCATCAATCCCGATCTCGAGGAGGTTCGCGACTTTCGTGACAGGAGGCTTGCCGCTATACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGTGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCAACACAGGAAGGCCCTTTGTGGATTGCTGGAACAATTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAGAAAGTGTCCGAAGAAGGTTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCGTTAAGGTTTAAGGTTGAGGTGATGGCCTATGATGGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACGGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTGTTAGAAAGAAAACTTCTTTTTAAGGTGAATGTCAAATCCTCCAACATCAAGCTCTATGACCAGGTGTATACAGTGATGAAGGTCTGCGAGGATGATACAATTTTTGAAATGCATCTCCCAAATAAAACGTTCTCCACTGTAACTGATACCGGGTGCAGTAACTCGGTGGATTTGTCAGCAGCTATGGTTGATATCAACAATCTTAGTGATTCTCAATATTCTGTGGATGTTGTGGAGGATAGTGTTACAAGCCTCAAGTGCAAAACTCCAGCCAAAACAGCTACCATGGTTTTAAAGCAACAAATTCCCATCAACATTGAGAATGAAGAAGAACTGGGGTTTTCAACCAACAAACTTACCCGCAATCGTGGAAAAAGACAGAAGATGCAACTTCATGATAGCAATGAATGA 3213 0.4227 MGETGKRYRNQRDHDGNGKNQKRRLNDKVERGNDELIIYRILCPDGVIGNVIGKNGKVINTIRQETRAKVKVVDPFPGAKERVITIYCYVKQKEEFEVDDELNNMQPLCAAQDALLKVHSVISNAMEAVGDSEKKQKDKEECQILVPSSQSANIIGKAGATIKKLRVKTRTNIKVIAKDRANPAHSCAMDFDNFVLITGESEAVKRALFAVSSIMYKFSAKEDIPLDTTVPEVPPSLIIPSDIPIYPPGRLYPTSDPIIPPRPVPQILGATNVHDLQGYADSGNAWSLYSSTLPAVSDPGGSQSEELIVRMLCPSDKIGCVIGKGGSIIKNIRQASGARIEVDDSKARYDECLITITATESSSDLKSMAVEAVLLLQGTINDEDDTPVSIRLLVPSKVIGCIIGKSGSIINEIRKRTRADIRISKSNKPKIADVNDELVEVVGGVDCVRDALIQIVLRLRDDVLKERDTGRNPPPIGSESFYSGGSVLPVRSVIPPVPDVPAPLAYDQRTESGTGLNMLSSSSLHGFGSYSMGENGYGSMSSYGYKLYGGPKKLAWNFLVHVVRLWKAPCRYNPKEINSIEMVLQDSQGGRIQASVPKALVRRWNDNIDEFKMYKMSNFIVVDKREKTKTSMNRWTLNFSHRTVVLLVENPTFPLQAFRLTQISELLNADRINDSQLIDIMGEVVGKEDPKELITSKGKETKRLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDISKLRINPDLEEVRDFRDRRLAAIPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTIVAINSGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGSASLRFKVEVMAYDGTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLFKVNVKSSNIKLYDQVYTVMKVCEDDTIFEMHLPNKTFSTVTDTGCSNSVDLSAAMVDINNLSDSQYSVDVVEDSVTSLKCKTPAKTATMVLKQQIPINIENEEELGFSTNKLTRNRGKRQKMQLHDSNE* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0040 1070 Gene3D K Homology domain, type 1 36 95 IPR036612 GO:0003723
Ahy10g0040 1070 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 3 535 - -
Ahy10g0040 1070 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 31 91 IPR036612 GO:0003723
Ahy10g0040 1070 SUPERFAMILY Nucleic acid-binding proteins 818 972 IPR012340 -
Ahy10g0040 1070 SMART kh_6 386 460 IPR004087 GO:0003676
Ahy10g0040 1070 SMART kh_6 35 107 IPR004087 GO:0003676
Ahy10g0040 1070 SMART kh_6 138 216 IPR004087 GO:0003676
Ahy10g0040 1070 SMART kh_6 305 375 IPR004087 GO:0003676
Ahy10g0040 1070 SUPERFAMILY Nucleic acid-binding proteins 659 782 IPR012340 -
Ahy10g0040 1070 Pfam Replication factor-A C terminal domain 835 963 IPR013955 -
Ahy10g0040 1070 Pfam Domain of unknown function DUF223 581 662 IPR003871 -
Ahy10g0040 1070 ProSiteProfiles Type-1 KH domain profile. 387 455 - -
Ahy10g0040 1070 ProSiteProfiles Type-1 KH domain profile. 139 211 - -
Ahy10g0040 1070 SUPERFAMILY Nucleic acid-binding proteins 555 651 IPR012340 -
Ahy10g0040 1070 CDD PCBP_like_KH 309 377 - -
Ahy10g0040 1070 CDD RPA1_DBD_A_like 560 645 - -
Ahy10g0040 1070 Gene3D - 550 646 IPR012340 -
Ahy10g0040 1070 Gene3D - 795 970 IPR012340 -
Ahy10g0040 1070 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 535 - -
Ahy10g0040 1070 MobiDBLite consensus disorder prediction 1 27 - -
Ahy10g0040 1070 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 299 361 IPR036612 GO:0003723
Ahy10g0040 1070 CDD RPA1_DBD_B_like 679 783 - -
Ahy10g0040 1070 CDD PCBP_like_KH 39 86 - -
Ahy10g0040 1070 MobiDBLite consensus disorder prediction 1049 1070 - -
Ahy10g0040 1070 Pfam KH domain 142 211 IPR004088 GO:0003723
Ahy10g0040 1070 Pfam KH domain 309 361 IPR004088 GO:0003723
Ahy10g0040 1070 Pfam KH domain 39 87 IPR004088 GO:0003723
Ahy10g0040 1070 Pfam KH domain 390 455 IPR004088 GO:0003723
Ahy10g0040 1070 Gene3D K Homology domain, type 1 307 382 IPR036612 GO:0003723
Ahy10g0040 1070 ProSiteProfiles Type-1 KH domain profile. 36 86 - -
Ahy10g0040 1070 Gene3D K Homology domain, type 1 385 462 IPR036612 GO:0003723
Ahy10g0040 1070 Gene3D K Homology domain, type 1 138 217 IPR036612 GO:0003723
Ahy10g0040 1070 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 136 219 IPR036612 GO:0003723
Ahy10g0040 1070 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 381 466 IPR036612 GO:0003723
Ahy10g0040 1070 CDD RPA1_DBD_C 816 974 IPR013955 -
Ahy10g0040 1070 CDD PCBP_like_KH 141 212 - -
Ahy10g0040 1070 CDD PCBP_like_KH 389 456 - -
Ahy10g0040 1070 ProSiteProfiles Type-1 KH domain profile. 306 373 - -
Ahy10g0040 1070 Gene3D - 652 785 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0040 Ahy-Chr10 430908 441000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0040 584 927 Core DNA Replication Machinery Family AT2G06510 22.905 3.00e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0040 K21444 - aip:107630584 1005.74