Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0012 ATGGTTACCTTCAGGTTCCACCAATACCAGGTTGTCGGGAGGGCTCTCCCTACTGAGTCAGATCAGCACCCTAAGATTTACCGCATGAAGCTCTGGGCTACCAATGAGGTTCGCGCAAAGTCCAAGTTCTGGTATTTTCTGAGGAAGCTGAAGAAAGTTAAGAAGAGCAATGGTCAGGTCCTTGCTATCAATGAGATTTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATCTGGTTGCGCTATCAGAGTCGGACAGGGTACCACAACATGTATAAGGAGTATCGTGACACCACTCTAAATGGTGCTGTTGAGGCGATGTACAATGAGATGGCTTCTCGCCACAGGGTTAGGTTCCCCTGCATTCAAATTATCAAGACTGCCACCATTCCAGCCAAGCTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCCAAGATTAAGTTCCCATTGGTCTTCAAGAAGGTTAGGCCACCAACAAGGAAGCTAAAGACCACGTACAAGGCCAAGAAGCCTAACTTGTTTATGTAA 537 0.4637 MVTFRFHQYQVVGRALPTESDQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKAKKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0012 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Ahy10g0012 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Ahy10g0012 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Ahy10g0012 178 SUPERFAMILY RplX-like 71 146 - -
Ahy10g0012 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Ahy10g0012 178 Gene3D - 72 147 - -
Ahy10g0012 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Ahy10g0012 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Ahy10g0012 178 Gene3D - 1 71 - -
Ahy10g0012 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0012 Ahy-Chr10 216579 218381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0012 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.011 1.18e-122 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0177 20 1530021 1531712 Ahy10g0012 10 216579 218381 hybridization