Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0010 ATGTCCACCTCCTCTGGAACCTCACAGACTTACCTCAAAGGACATGAAGAACACATGAATAATTCTTCATTATCAACTCTTATTATTCTACAACGCAACACTTCATCTTCTTGTGGCACTGAGAGAAGAGGTAGAAGAAAGCAGCAATCAGCAGAACCAGGAAGATTTCTTGGTGTGAGAAGACGGCCATGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAGAGACACTGGCTTGGAACCTTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTGGCTTAGCAAGAACAAACTTCATCTACACAACCACACAAAACAACACCATCAATGGTAATAATCTTCTCAACTCTATGGATAATAATCCTCATCATCATCAACAAGTTGTTTTGCCACCTTCACAAGATTATTTCCTCAACAATACTCATCAGAATTGCATCATGTCTCACCAACTTGATGATGATATTACTTCCCTTGTCGACGATGAGAACCCTTCAAATTTGGTGATGAAGAGCGATGAGAATTTGTTCTTCTTCTCAGCCACTGATTCCACAAATTCTGGCTATCTGGAATGCATTGTTCCAGAGAATTGTTTCAGACCTATTTCTTCTAGTACTCCCACCAACAACAATACCTCAAACTCCTCCATGAGTGCTGCTTCAGCTCCTAGTGACCAAAATGTTGTTAGCAGCATTAACACAAACACCATGGAGGCATTGAAGCACGTGAGAACAATGGCACCAGATTACTATGGTGGTGAAGAACTTGATGGTCAAGGAATATTCTGGAACAATCAGGATGAGCAACAATCATCTTGGGATTGCAATAATAAGAGTAATAATTATGGTGAACTTTCAGGTATATTTGACAAACAAGAAGGTTGCATGAATGCATTGTGTCCCATCATGAATGAGACTAGTCCAAGCTATGGAGTAGTAGTGACTACTCGTGAGTCTGCTATTCCTATTCCTTCAACTACTTCTCCATCAATTCCTTCTTTGGGGGATGTCCACTTAGGAATGACCTACTCGCTCTTCTAG 1074 0.4125 MSTSSGTSQTYLKGHEEHMNNSSLSTLIILQRNTSSSCGTERRGRRKQQSAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSIKGGLARTNFIYTTTQNNTINGNNLLNSMDNNPHHHQQVVLPPSQDYFLNNTHQNCIMSHQLDDDITSLVDDENPSNLVMKSDENLFFFSATDSTNSGYLECIVPENCFRPISSSTPTNNNTSNSSMSAASAPSDQNVVSSINTNTMEALKHVRTMAPDYYGGEELDGQGIFWNNQDEQQSSWDCNNKSNNYGELSGIFDKQEGCMNALCPIMNETSPSYGVVVTTRESAIPIPSTTSPSIPSLGDVHLGMTYSLF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0010 357 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 351 - -
Ahy10g0010 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 351 - -
Ahy10g0010 357 MobiDBLite consensus disorder prediction 215 237 - -
Ahy10g0010 357 MobiDBLite consensus disorder prediction 34 56 - -
Ahy10g0010 357 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Ahy10g0010 357 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Ahy10g0010 357 SUPERFAMILY DNA-binding domain 56 112 IPR016177 GO:0003677
Ahy10g0010 357 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Ahy10g0010 357 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Ahy10g0010 357 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Ahy10g0010 357 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Ahy10g0010 357 Pfam AP2 domain 58 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0010 Ahy-Chr10 190763 191836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0010 27 226 AP2-EREBP Transcription Factor Family AT5G18560 46.250 7.69e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy10g0010 AP2 1.10E-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0010 - - adu:107468049 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0174 20 1466952 1468489 Ahy10g0010 10 190763 191836 hybridization
Ahy11g2532 11 141155087 141156525 Ahy10g0010 10 190763 191836 PCT
Ahy1g2393 1 102020374 102021450 Ahy10g0010 10 190763 191836 PCT
Ahy10g0010 10 190763 191836 Ahy11g2532 11 141155087 141156525 PCT
Ahy10g0010 10 190763 191836 Ahy1g2393 1 102020374 102021450 PCT