Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0001 ATGGCGAGGCCTTCGAAGCCGCAAGTTTCTTCCGACGAAGCTATCTCTAGCGGTTCGAGCTCCGAGGAGCAGGTCAACCAGCAGATCAATGAAGAGGACGAGGAGGAGCTTGAGGCGGTGGCTCGTCAAGCTAGCTCCGACGACGACGACGACGAAGCCGGAAATGATAATTCGCACGATGACGACGAAGATCCTGCTGCCGCCGGAGATGCTGACGAGGATGAGCAGGGTGAAGATGCTGTTGATCCTGGCAAGCGTGAGAAAGCTAGATTGAAAGAGATGCAGAAAATGAAGAAGCAGAAGATTCAGGAGATATTGGATGCACAAAATGCAGCCATAGATGCCGACATGAACAATAGAGGAAAAGGAAGACTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGGCAAGAGGAAGGGGCCGCCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAGGAAGATGGTTTATCAAACACTCGTCTCGTGACACAACCATCATGCATCCAAGGGAAATTGAGGGACTACCAACTTGCTGGGCTAAATTGGCTTATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTTGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGTTTTTGTCCTATTCTACGTGCAGTAAAGTTCCTTGGCAACCCTGAAGAGAGGAGACATATAAGGGAGGAATTACTGGTAGCCGGGAAGTTCGATGTCTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGTTACATCATTATCGATGAAGCCCATCGAATTAAGAATGAAAATTCCTTGCTTTCCAAAACAATGAGACTCTACAACACAAATTATCGCCTCCTTATTACCGGCACACCGCTTCAGAACAATCTTCATGAACTCTGGTCTCTGCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAAGAGGTTGTCCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGTAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCGCCTAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTACTATAGAGCGCTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAGCTACGAAAATGTTGCAATCATCCATATCTTTTCCAGGGTGCTGAACCCGGTCCTCCATATACAACAGGGGATCATCTCATTACTAATGCTGGTAAAATGGTTCTCTTGGACAAGTTACTTCCTAAATTGAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCACTATTGTCGCATAGATGGCAATACTGGTGGAGATGAGCGGGATGCTTCCATTGACGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGAATTAACCTTGCTACTGCTGATGTTGTCATCCTATATGATAGTGACTGGAACCCACAAGTTGACTTGCAAGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTTCGCTTTTGCACAGAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGACGGTTGGCTGAGCAAAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCAGAAATGGTTTTCAGTTCCAAAGATAGCACTATTACAGATGAGGACATTGATAGAATCATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGCCGAGTTATATGATTTTGATGATGATAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAATTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACATTACGACAAGGAGGTCCTGCTAAACCAAAGGAGCCACGAATTCCTAGGATGCCTCAGTTGCACGACTTCCAGTTTTTTAACACACAAAGGCTTAGTGAGTTGTATGAAAAGGAAGTGCGCTACCTAATGCAAACGCATCAAAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCAGAAGATGTGGGAGATCCATTGACTGCTGAAGAATTGGAAGAAAAGGAGCGCCTTCTAGAGGAGGGATTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATCAGGGCTTGCGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGGAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCACGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGATACAAGAATCCATGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGGTTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGACTGGTTTGTTAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGTGACACACTCATTCGCCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCGCGCAAAGAGAAGAAACTTGCAAAGACCATGACCCCATCAAAGCGGACCCTGGCAAGACAGACAGAAGCTCCATCTTCTTTGAAGAAGCGCAAGCAATTAACCATGGATGATTATGGAAGTGTGGGAAAAAGGAGAAAATAA 3204 0.4263 MARPSKPQVSSDEAISSGSSSEEQVNQQINEEDEEELEAVARQASSDDDDDEAGNDNSHDDDEDPAAAGDADEDEQGEDAVDPGKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKARGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYHYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKTMTPSKRTLARQTEAPSSLKKRKQLTMDDYGSVGKRRK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0001 1067 SMART helicmild6 523 607 IPR001650 -
Ahy10g0001 1067 Gene3D ISWI, HAND domain 744 842 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ahy10g0001 1067 Gene3D - 931 1034 - -
Ahy10g0001 1067 CDD SF2_C_SNF 493 618 - -
Ahy10g0001 1067 SMART ultradead3 188 380 IPR014001 -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 1016 1031 - -
Ahy10g0001 1067 ProSiteProfiles SANT domain profile. 842 894 IPR017884 -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 9 26 - -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 1045 1067 - -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 1016 1067 - -
Ahy10g0001 1067 Coils Coil 91 111 - -
Ahy10g0001 1067 Gene3D - 843 897 - -
Ahy10g0001 1067 CDD DEXHc_SMARCA1_SMARCA5 189 409 IPR044754 GO:0005524
Ahy10g0001 1067 SMART sant 843 892 IPR001005 -
Ahy10g0001 1067 SMART sant 945 1006 IPR001005 -
Ahy10g0001 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 690 IPR027417 -
Ahy10g0001 1067 Gene3D - 413 705 IPR027417 -
Ahy10g0001 1067 PANTHER SNF2/RAD54 HELICASE FAMILY 13 1067 - -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 79 94 - -
Ahy10g0001 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 369 IPR014001 -
Ahy10g0001 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 407 IPR027417 -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 49 78 - -
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 1 94 - -
Ahy10g0001 1067 Pfam Helicase conserved C-terminal domain 495 607 IPR001650 -
Ahy10g0001 1067 CDD SANT 846 890 IPR001005 -
Ahy10g0001 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 755 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Ahy10g0001 1067 Pfam HAND 756 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
Ahy10g0001 1067 Gene3D iswi atpase 898 930 - -
Ahy10g0001 1067 SUPERFAMILY Homeodomain-like 898 1020 IPR009057 -
Ahy10g0001 1067 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 13 1067 - -
Ahy10g0001 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 648 IPR001650 -
Ahy10g0001 1067 SUPERFAMILY Homeodomain-like 846 896 IPR009057 -
Ahy10g0001 1067 Pfam SLIDE 900 1010 IPR015195 GO:0003677|GO:0005634|GO:0006338
Ahy10g0001 1067 MobiDBLite consensus disorder prediction 140 172 - -
Ahy10g0001 1067 Pfam SNF2-related domain 205 472 IPR000330 GO:0005524|GO:0140658
Ahy10g0001 1067 Gene3D - 193 408 IPR038718 -
Ahy10g0001 1067 Coils Coil 1000 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0001 Ahy-Chr10 13804 22268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0001 184 634 RAD5 or RAD16-like Gene Family AT1G02670 26.916 1.22e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy10g0001 SNF2_N 5.40E-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0001 K11654 - gmx:100809750 1887.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2519 11 140978755 140986555 Ahy10g0001 10 13804 22268 PCT
Ahy1g2404 1 102124531 102132259 Ahy10g0001 10 13804 22268 PCT
Ahy10g0001 10 13804 22268 Ahy11g2519 11 140978755 140986555 PCT
Ahy10g0001 10 13804 22268 Ahy1g2404 1 102124531 102132259 PCT