Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2338 ATGGGGGCGAAGGCAAAGAAAGCTATGAAGAAGAAGAATTTGAACAAGCCTGAAGCTGCTGCTACTAAGCTTCCATCTTCTTCTGCTTCCACCACCAAATCAGATGGTCCTGATTTTCTGCCGTTGGAAGGTGGTCCAGCTCGCAGACTCCCCCAACAGAAGCCGCTGGACAGTGCTGCAACTGTTTTGTATGTAGGAAGGATTCCGCATGGGTTCTATGAAAACGAGATGCAAGGGTTTTTTGGACAATTTGGAACCATCAAAAGGTTGAGAATTGCTAGAAATAAAAAGACGGGAAAATCAAGACATTATGGCTTCATTGAGTTTGAATCTCCTGAGGTAGCAAAAGTTGTAGCTGATACTATGCACAATTATCTGCTTTTTGAACACCTTCTCCAAGTCCACTTGGTACCTACTGAGGATGTTCACCCAAAATTATGGAGAGGTTTCAATTACCGGTACAAGCCAGTGGATGCAGTCCAAATTGAACGAGAGCGCCATGACAAGGAAAGAACACTGGACGAGCATAAGAAGTTGGTGGAAAGGGTTTTGAAGCGTGACAATAAACGACGAAGAAAGATGGAGGCTGCCGGCATTGATTACGAGTGCCCCAAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGAAGACTAA 666 0.4444 MGAKAKKAMKKKNLNKPEAAATKLPSSSASTTKSDGPDFLPLEGGPARRLPQQKPLDSAATVLYVGRIPHGFYENEMQGFFGQFGTIKRLRIARNKKTGKSRHYGFIEFESPEVAKVVADTMHNYLLFEHLLQVHLVPTEDVHPKLWRGFNYRYKPVDAVQIERERHDKERTLDEHKKLVERVLKRDNKRRRKMEAAGIDYECPKIVGNIQPAPKKIKFED* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2338 221 SMART rrm1_1 62 135 IPR000504 GO:0003723
Aev10g2338 221 MobiDBLite consensus disorder prediction 20 35 - -
Aev10g2338 221 PANTHER - 1 220 - -
Aev10g2338 221 Gene3D - 3 136 IPR012677 -
Aev10g2338 221 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 220 - -
Aev10g2338 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 130 IPR000504 GO:0003723
Aev10g2338 221 Coils Coil 159 182 - -
Aev10g2338 221 CDD RRM_NIFK_like 62 135 - -
Aev10g2338 221 MobiDBLite consensus disorder prediction 1 53 - -
Aev10g2338 221 SUPERFAMILY RNA-binding domain, RBD 48 150 IPR035979 GO:0003676
Aev10g2338 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2338 Aev-Chr10 23194128 23196222 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2338 61 134 Eukaryotic Initiation Factors Gene Family AT1G71770 33.784 4.37e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2338 K14838 - gmx:100814276 333.569