Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2238 ATGGCTTCGTTATTCAAGGATCCATCTAAGCTTTCAGCGTACCGAGATAGAAGATTTCCTGGGAATCAAGAGGAGTTTGAGCATGCGCTTCAGACATCAACAACTGTTTATGTGGGGAATATGTCGTTCTACACGACAGAGGAGCAGGTTTACGAGCTGTTTTCCCGAACAGGTGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACACGAAAACACCCTGTGGCTTCTGTTTCGTATTATATTACTCGCGGGAAGATACTGAGGATGCTTGCAAATACATAAGTGGCACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGACTGGGGGTTCCAGGAGGGTAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAGTCTCCTTTTGGTTTCCTTAATTCCCACATACGTAGAGGTGGTTATGGGAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCAGGTTCTTTGGGCTCTTTTCCACCAGTTCTTCCACCTTCCTATGGTAGACATGGTGGAGGCCATGGTCATGGTCATGGTGGTTCTCATCGGCATGGTAGAGGAGATTACTATCGGAAGAGACACAGAGATGATGACCGCCACACACGTGAGCCCTCAAAAAGATCATCAGATCATGAATCTCGGAGAGACACCGACCATGAGTCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGACGAAGACGAAGAAGATGACAGAAAAAGACGAGCTTAA 768 0.4609 MASLFKDPSKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRTGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQSPFGFLNSHIRRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVLPPSYGRHGGGHGHGHGGSHRHGRGDYYRKRHRDDDRHTREPSKRSSDHESRRDTDHESRPEKNPRFRESGDSDEDEEDDRKRRA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2238 255 CDD RRM_NCBP2 36 113 IPR034148 -
Aev10g2238 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Aev10g2238 255 SUPERFAMILY RNA-binding domain, RBD 22 132 IPR035979 GO:0003676
Aev10g2238 255 SMART rrm1_1 35 108 IPR000504 GO:0003723
Aev10g2238 255 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 209 - -
Aev10g2238 255 Gene3D - 6 149 IPR012677 -
Aev10g2238 255 MobiDBLite consensus disorder prediction 170 255 - -
Aev10g2238 255 MobiDBLite consensus disorder prediction 198 255 - -
Aev10g2238 255 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 209 IPR027157 GO:0000339|GO:0005846|GO:0045292
Aev10g2238 255 MobiDBLite consensus disorder prediction 183 197 - -
Aev10g2238 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2238 Aev-Chr10 22572342 22574831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2238 31 187 Eukaryotic Initiation Factors Gene Family AT1G49760 22.013 5.00e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2238 K12883 - gmx:100776217 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2238 10 22572342 22574831 Aev10g2238 10 22572342 22574831 ECH