Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2231 ATGAGCAGCCTCTGTTCTGATCAGCACCACCACCACCACCACAAGTTCCTCCCTTCCCACCACCTTCTCTCTCCCAAGAAGTCCGTAAGAGACATTGACATCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGTGGACGGTGGTGGTTTACCCGGCGAAATGTTTTCCGATGACACCATTTTCCAGAAATTCCTACCTTACAACAACCCCTCAGCAGATTCTGACTCCGGCTCTGACACCGACGACCCCTACTCGTCGGACCATTTCAGGATGTACGAGTTCAAGGTCCGCCGGTGCACCAGGAGCCGGAGCCACGACTGGACTGACTGTCCCTTCGCCCACCCAGGCGAAAAGGCACGCCGTCGTGACCCAAGGCGGTTCCACTACTCCGGCACGGTGTGCCCGGAGTATCGCCGCGGCTCTTGCAGCCGCGGCGATAGCTGTGAGTTTGCTCACGGCGTGTTTGAGTGCTGGCTGCACCCTGCTCGGTACAGAACCGAAGCATGCAAAGACGGAAAGAACTGTAAGAGGAAAGTGTGCTTCTTTGCGCACACACCGAAGCAATTGAGAATCCTTCCAGTCACAATGACCTCTTCAAATGAAATGTCTCCATGCAAGAAGAACAGCAAGCTCGGCTGTTGTGTGTTTTGCCACAACTGCGGTGTTGCTAATTCCCCAACTTCAACACTTTTTGGTATGTCACGTTTTTCACCGCCTCTGTCTCCGTCGTCCTCCGCCGCATCACCACCGGTATCTCCGGTGAAACGGGTCTCGCCGATTTCTCGATACTGCCGTGGTGGTGGTGGTGCGGTGAGTAATGGTAATAGCGTGAGTTACAAGGATGTGGTGAATGAGTTAATGAGTTCTTTGGAGGGTTTGAGTTTTAGCAACGCTTCTGGTGTTTCCGTTGCTAATAAAACGACGAATTTGCCTTGGGTTGATGTGTCTTCTCTCAGCTGTGAAGATCCGCAAGAGTATGTCTTTTCGCCTTCTTCTTCTATGATGACACCAACAACGAGCTATGAAAATGTTGGGAAATATTCGAGGTTCTTTAGCAACGAGGAGAATGGTAGTGTTGCTAATGCTAATGCTAATGCTTCTGAGGTTAATGGTTCTAATTTTCCTGCCCCGGATCTCGGATGGGTGAATGATCTGCTGATGTAG 1167 0.5193 MSSLCSDQHHHHHHKFLPSHHLLSPKKSVRDIDIPPRKLLTRRSAVDGGGLPGEMFSDDTIFQKFLPYNNPSADSDSGSDTDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGSCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPKQLRILPVTMTSSNEMSPCKKNSKLGCCVFCHNCGVANSPTSTLFGMSRFSPPLSPSSSAASPPVSPVKRVSPISRYCRGGGGAVSNGNSVSYKDVVNELMSSLEGLSFSNASGVSVANKTTNLPWVDVSSLSCEDPQEYVFSPSSSMMTPTTSYENVGKYSRFFSNEENGSVANANANASEVNGSNFPAPDLGWVNDLLM* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2231 388 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Aev10g2231 388 SUPERFAMILY CCCH zinc finger 128 158 IPR036855 GO:0046872
Aev10g2231 388 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Aev10g2231 388 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Aev10g2231 388 Gene3D - 128 193 - -
Aev10g2231 388 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 31 387 - -
Aev10g2231 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Aev10g2231 388 PANTHER UNKEMPT FAMILY MEMBER 31 387 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2231 Aev-Chr10 22536751 22537917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2231 85 250 C2H2 Transcription Factor Family AT5G12850 50.000 6.50e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev10g2231 zf-CCCH 3.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2231 K23047 - gmx:100801371 411.379