Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2220 ATGCAGCGCCACCGTGTCTCCGCCGTGTCGTTTTTGAGCTTCTGGTCCTGTGTTGTGGTAGTGGTGTGCGGGCAGGGACAGGCCCAACACGGTGGCATCGACCCGCATTGGTATCCGGGCACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGTAGCACGGGAGGGGCGTGCGGGTATGGAACGATGGTGGACGTGAAGCCGCTGAGAGCGCGAGTGGGGGCGGTGGGGCCAGTGCTGTTCAAGAAGGGAGAAGGGTGCGGCGCCTGCTACAAGGTGAAGTGTTTGGACCCAACCATATGCACCAAGCGTGCTGTCACCGTTATAATCACCGACGAGTGCCCTGGCTGCCCCTCCGACAGAACCCACTTCGACCTCAGCGGTGCCGCTTTCGGCCACATGGCTCTTTCTGGCCGCAACGCTCACCTTAGGGACCGAGGTCAAATTCCTATCATCTACCGAAGAACATCCTGTAAATATCCGGGCAAGAACATTGGCTTCCATGTGAATGAAGGTTCCACACCTTTTTGGCTTTCACTTCTAGTGGAGTTTGAGAATGGAGATGGCGACATCAGCTCCATGTATATACAAGAAGCAGGGTCTAGTGAGTGGCTACAAATGAATCACCTATGGGGTGCAAATTGGAACATTATTGGAGGACCTCTAAAAGGGCCTTTCTCTGTGAAACTAAGCACTTCCACAGGGAAGACCCTCACTGCCAGGGATGTCATTCCAACCAATTGGTCTCCAAAAGCTACTTATACCTCTCGCTTAAATTTCCAACCCTAA 789 0.5463 MQRHRVSAVSFLSFWSCVVVVVCGQGQAQHGGIDPHWYPGTATWYGDPEGDGSTGGACGYGTMVDVKPLRARVGAVGPVLFKKGEGCGACYKVKCLDPTICTKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMALSGRNAHLRDRGQIPIIYRRTSCKYPGKNIGFHVNEGSTPFWLSLLVEFENGDGDISSMYIQEAGSSEWLQMNHLWGANWNIIGGPLKGPFSVKLSTSTGKTLTARDVIPTNWSPKATYTSRLNFQP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 75 86 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Aev10g2220 262 SUPERFAMILY Barwin-like endoglucanases 35 162 IPR036908 -
Aev10g2220 262 SMART dpbb_1 73 153 IPR007112 -
Aev10g2220 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Aev10g2220 262 PANTHER EXPANSIN-LIKE PROTEIN B1 12 262 - -
Aev10g2220 262 Gene3D - 22 158 IPR036908 -
Aev10g2220 262 PANTHER EXPANSIN-B3 12 262 - -
Aev10g2220 262 Pfam Lytic transglycolase 78 151 IPR009009 -
Aev10g2220 262 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Aev10g2220 262 Gene3D - 159 257 IPR036749 -
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Aev10g2220 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Aev10g2220 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Aev10g2220 262 Pfam Expansin C-terminal domain 165 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2220 Aev-Chr10 22473545 22475237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2220 34 198 Expansin Gene Family AT4G28250 70.909 1.99e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2220 K20628 - gmx:100810778 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2220 10 22473545 22475237 Aev10g2220 10 22473545 22475237 ECH