Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2217 ATGGACTTGCATCAGTATTTTGATGAGGCAATGCCCCAAATGGATTCCTACGAGGATAATTCATCTCTGGAAATGTGGAAATGCGCTAGCAATACCGTTGCGGATTCTGATAGAAATGCCTCCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCTGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCAAACCGTCTCTTCTGAAAATGGAGAGAAGCAGAAGCCTCAATGTCCAGTTTGCAAGTCAGAAATTTCTCAATCATCCCTTGTTCCATTATACGGCCGAGGCCAGACCTCATCATCAGAAGACAAGTCTCACAATGTAGGCATTGTCATACCGCGAAGACCCCTCGGTCCAAGATCATCTAGTACCACAACTACTTCGCAGCCTACTTCTCGTGCTTATCATCCCAATCATTCGCAACGGTTCAACTCAATTCCAGGAAGTTACACATCACCGATGCTCAACACAGGCGGCTCGCTATCAAATGCATTTACCACAACATATGGAGTCTTTGGCGAGACCATGTATGCAAGGGTATTTGGGAACCAGGTGACAAATGTGTACACATACCCGAATTCATATCATCTTTCAGGGAATGCCAATCCGAGGATCCGAAGGCATCTAACGGAAGCTGATAAGTCGCTTGGTAGAATATGGTTTTTCCTCCTTTGTTGTGCACTTTTGTGCCTTATCTCATTCTGA 741 0.4534 MDLHQYFDEAMPQMDSYEDNSSLEMWKCASNTVADSDRNASFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQTVSSENGEKQKPQCPVCKSEISQSSLVPLYGRGQTSSSEDKSHNVGIVIPRRPLGPRSSSTTTTSQPTSRAYHPNHSQRFNSIPGSYTSPMLNTGGSLSNAFTTTYGVFGETMYARVFGNQVTNVYTYPNSYHLSGNANPRIRRHLTEADKSLGRIWFFLLCCALLCLISF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2217 246 Pfam Zinc finger, C3HC4 type (RING finger) 44 92 IPR018957 GO:0046872
Aev10g2217 246 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Aev10g2217 246 ProSiteProfiles Zinc finger RING-type profile. 44 93 IPR001841 -
Aev10g2217 246 MobiDBLite consensus disorder prediction 105 150 - -
Aev10g2217 246 MobiDBLite consensus disorder prediction 130 150 - -
Aev10g2217 246 CDD RING-HC_AtRMA_like 42 94 - -
Aev10g2217 246 SUPERFAMILY RING/U-box 40 105 - -
Aev10g2217 246 SMART ring_2 44 92 IPR001841 -
Aev10g2217 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 108 IPR013083 -
Aev10g2217 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aev10g2217 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2217 Aev-Chr10 22459972 22460712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2217 37 246 C3H Transcription Factor Family AT4G28270 37.209 5.58e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2217 K10666 - gmx:100785491 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2217 10 22459972 22460712 Aev10g2217 10 22459972 22460712 ECH