Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev10g2178 | ATGGGTTATTTGAGAGAGTGCAATGTAGAAGACAAGAATTTATACCTCCACACAACTCCAATTGCTACTACTTTCATTGAATGGCTCAAGCCACCGCCACCACCATCTTACTCTCCTCCTCCTCCTCAAACTAATAATCAGGACGATGCTGCTGATGAGACTATCCACCAGTTTTTTCCCATTTTGAGTGGGTTGAAGGCTTCAAAGGAAGACCAAGAGGGATCATTGTTATTGGGTAATAATTATGATGAACAAGTGAAGAAAGAAGAGAGGGTGGAGGAGGTGAGTGTGCTGGCTTTGCACATTGGATTGCCAATTAGCAGAGATCAGGGTAATATTATTGGTCCTCATGATGCGGCTTTTCATCATCATGTCGTCAAGGATGAAGAAGAAGATGAGGATGAGAGGAGGTTTTGGATACCGAGTCCTGCACAGATCCTTGTTGGCCCTATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTCAGGAAAGGCCGAGACTCACTGAGAGGAACACAGCCAGCAGCAATGCTAAGGCTGCCATGTTACTGCTGTGCGCAGGGCTGCAAGAACAACATCAACCACCCACGAGCCAAGCCTTTGAAGGACTTCAGAACTCTGCAGACACACTACAAGAGGAAGCATGGCACGAAGCCCTTCTTGTGCAGCAAGTGTGGCAAGGCATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTCTGGTATTGCGCCTGTGGCTCTGATTTCAAGCACAAAAGGTCTCTCAAAGACCACATTCGATCCTTTGGCAAGGGCCATTCCCCACATCCTTCCCTTGAAGGATTTCAGGATGACAAGGATTATTGCATCACAGCCTCTGATGAAGATAATAATAATAATAATAATGATCAATAG | 960 | 0.4573 | MGYLRECNVEDKNLYLHTTPIATTFIEWLKPPPPPSYSPPPPQTNNQDDAADETIHQFFPILSGLKASKEDQEGSLLLGNNYDEQVKKEERVEEVSVLALHIGLPISRDQGNIIGPHDAAFHHHVVKDEEEDEDERRFWIPSPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGRDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFLCSKCGKAFAVKGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFQDDKDYCITASDEDNNNNNNDQ* | 320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev10g2178 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 223 | 257 | IPR036236 | - | |
Aev10g2178 | 319 | Gene3D | Classic Zinc Finger | 152 | 175 | - | - | |
Aev10g2178 | 319 | Gene3D | Classic Zinc Finger | 235 | 284 | - | - | |
Aev10g2178 | 319 | Pfam | C2H2-type zinc finger | 153 | 172 | - | - | |
Aev10g2178 | 319 | PANTHER | ZINC FINGER PROTEIN WIP2 | 43 | 314 | IPR043584 | GO:0003700|GO:0010468 | |
Aev10g2178 | 319 | SMART | c2h2final6 | 153 | 175 | IPR013087 | - | |
Aev10g2178 | 319 | SMART | c2h2final6 | 200 | 232 | IPR013087 | - | |
Aev10g2178 | 319 | SMART | c2h2final6 | 237 | 257 | IPR013087 | - | |
Aev10g2178 | 319 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 153 | 180 | IPR013087 | - | |
Aev10g2178 | 319 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 237 | 257 | IPR013087 | - | |
Aev10g2178 | 319 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - | |
Aev10g2178 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 145 | 176 | IPR036236 | - | |
Aev10g2178 | 319 | MobiDBLite | consensus disorder prediction | 27 | 49 | - | - | |
Aev10g2178 | 319 | PANTHER | ZINC FINGER PROTEIN WIP3-LIKE | 43 | 314 | - | - | |
Aev10g2178 | 319 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 155 | 175 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev10g2178 | Aev-Chr10 | 22220620 | 22222521 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev10g2178 | 24 | 307 | C2H2 Transcription Factor Family | AT1G08290 | 56.615 | 9.85e-115 | 333 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Aev10g2178 | zf-C2H2_6 | 0.00014 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev10g2178 | - | - | gmx:100802773 | 412.535 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev10g2178 | 10 | 22220620 | 22222521 | Aev10g2178 | 10 | 22220620 | 22222521 | ECH | |
Aev10g2178 | 10 | 22220620 | 22222521 | Aev04g2858 | 04 | 28318548 | 28336138 | PCT |