Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2178 ATGGGTTATTTGAGAGAGTGCAATGTAGAAGACAAGAATTTATACCTCCACACAACTCCAATTGCTACTACTTTCATTGAATGGCTCAAGCCACCGCCACCACCATCTTACTCTCCTCCTCCTCCTCAAACTAATAATCAGGACGATGCTGCTGATGAGACTATCCACCAGTTTTTTCCCATTTTGAGTGGGTTGAAGGCTTCAAAGGAAGACCAAGAGGGATCATTGTTATTGGGTAATAATTATGATGAACAAGTGAAGAAAGAAGAGAGGGTGGAGGAGGTGAGTGTGCTGGCTTTGCACATTGGATTGCCAATTAGCAGAGATCAGGGTAATATTATTGGTCCTCATGATGCGGCTTTTCATCATCATGTCGTCAAGGATGAAGAAGAAGATGAGGATGAGAGGAGGTTTTGGATACCGAGTCCTGCACAGATCCTTGTTGGCCCTATGCAGTTTGCTTGCTCCATTTGCAGCAAGACCTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTCAGGAAAGGCCGAGACTCACTGAGAGGAACACAGCCAGCAGCAATGCTAAGGCTGCCATGTTACTGCTGTGCGCAGGGCTGCAAGAACAACATCAACCACCCACGAGCCAAGCCTTTGAAGGACTTCAGAACTCTGCAGACACACTACAAGAGGAAGCATGGCACGAAGCCCTTCTTGTGCAGCAAGTGTGGCAAGGCATTTGCTGTCAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTCTGGTATTGCGCCTGTGGCTCTGATTTCAAGCACAAAAGGTCTCTCAAAGACCACATTCGATCCTTTGGCAAGGGCCATTCCCCACATCCTTCCCTTGAAGGATTTCAGGATGACAAGGATTATTGCATCACAGCCTCTGATGAAGATAATAATAATAATAATAATGATCAATAG 960 0.4573 MGYLRECNVEDKNLYLHTTPIATTFIEWLKPPPPPSYSPPPPQTNNQDDAADETIHQFFPILSGLKASKEDQEGSLLLGNNYDEQVKKEERVEEVSVLALHIGLPISRDQGNIIGPHDAAFHHHVVKDEEEDEDERRFWIPSPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGRDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFLCSKCGKAFAVKGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFQDDKDYCITASDEDNNNNNNDQ* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2178 319 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
Aev10g2178 319 Gene3D Classic Zinc Finger 152 175 - -
Aev10g2178 319 Gene3D Classic Zinc Finger 235 284 - -
Aev10g2178 319 Pfam C2H2-type zinc finger 153 172 - -
Aev10g2178 319 PANTHER ZINC FINGER PROTEIN WIP2 43 314 IPR043584 GO:0003700|GO:0010468
Aev10g2178 319 SMART c2h2final6 153 175 IPR013087 -
Aev10g2178 319 SMART c2h2final6 200 232 IPR013087 -
Aev10g2178 319 SMART c2h2final6 237 257 IPR013087 -
Aev10g2178 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Aev10g2178 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 257 IPR013087 -
Aev10g2178 319 MobiDBLite consensus disorder prediction 27 42 - -
Aev10g2178 319 SUPERFAMILY beta-beta-alpha zinc fingers 145 176 IPR036236 -
Aev10g2178 319 MobiDBLite consensus disorder prediction 27 49 - -
Aev10g2178 319 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 314 - -
Aev10g2178 319 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2178 Aev-Chr10 22220620 22222521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2178 24 307 C2H2 Transcription Factor Family AT1G08290 56.615 9.85e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g2178 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2178 - - gmx:100802773 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2178 10 22220620 22222521 Aev10g2178 10 22220620 22222521 ECH
Aev10g2178 10 22220620 22222521 Aev04g2858 04 28318548 28336138 PCT