Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g2055 ATGGACATCGATTCTTCAGGGGCCTCTTCTTGGCTCTATGATTATGCCTTTGATCACATCTCTATTGCTTCTGGAGCTGAATTCATGGCTCCAGACTGTGCTGCTTTCAACTGGGTCATGCCTCAGACTCACAACACCACCTTCAACGGTCCTTCTCCTTCCAATTTGAGCTTCGAAATGGAATACTCATTGGATTCAACTGTCCTGGAAGGTGGCCCCCCTTCAAAGAGGTCGAGGACTGAATCATGCGCATCTGGATCCAAGGCATGCCGTGAGAAACTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAACAGCCCAAAACAGACAAGGTTGCTGTATTAAGTGATGCAGTTCGAGAGGTAACGCAATTAAGAAATGAAGCACAGAAACTGAAGGAAATGAATGATGAACTCCTTGAAAAAGTTAAAGAACTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGAATAGGCTGAAGATAGATAAAGAAAAGTTGGAGCAGCAGATCAAATTGACAAATTCACAGCCCAGTTTCCTCCCTCATCCTTCATCAGCAAAAGGGCAAGCTGCAAGCCACAAGCTGATACCCTTCATTGGTTACCCTGGAATTGCCATGTGGCAGTTTATGCCCCCAGCTGCACTTGACACATCCAAGGACCATCTGCTTCGACCTCCAGTGGCATAA 717 0.4575 MDIDSSGASSWLYDYAFDHISIASGAEFMAPDCAAFNWVMPQTHNTTFNGPSPSNLSFEMEYSLDSTVLEGGPPSKRSRTESCASGSKACREKLRRDKLNERFLELSSILEPGKQPKTDKVAVLSDAVREVTQLRNEAQKLKEMNDELLEKVKELKAEKNELRDEKNRLKIDKEKLEQQIKLTNSQPSFLPHPSSAKGQAASHKLIPFIGYPGIAMWQFMPPAALDTSKDHLLRPPVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g2055 238 CDD bHLH_AtILR3_like 88 163 - -
Aev10g2055 238 Gene3D - 87 164 IPR036638 GO:0046983
Aev10g2055 238 Coils Coil 124 186 - -
Aev10g2055 238 Pfam Helix-loop-helix DNA-binding domain 87 134 IPR011598 GO:0046983
Aev10g2055 238 PANTHER BHLH TRANSCRIPTION FACTOR 3 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aev10g2055 238 SMART finulus 89 140 IPR011598 GO:0046983
Aev10g2055 238 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 3 238 - -
Aev10g2055 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 158 IPR036638 GO:0046983
Aev10g2055 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g2055 Aev-Chr10 21515574 21517406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g2055 76 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 65.698 2.19e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev10g2055 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g2055 - - gmx:100806838 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2055 10 21515574 21517406 Aev10g2055 10 21515574 21517406 ECH