Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1992 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGTGAGGTCGTTAAGGTAGACCCTACCGAATTCGAAGCATGCTTACACCTTTCACAGGTTGCTCTTGGTGAGGCCAAGAAGGACAAACCTAGTGAACCTGTTCTTGTTTACTTGAAAGTTGGTGCCCAGAAATTTGTTTTGGGTACTCTTACAAGGGAGAAGTTTCCTCAAATAGCACTTGATTTGGTTCTTGAGAAGGAATTTGAGATTTCTCACAACTCAAAGAATGCTAATGATAGCGACGAAGAGGATATCCAATTGCCAATCACAGCAAATGGAGTTGCTGCACCAAAAGCTGAAGCTGCAAAGGCTTCTCAATCTAAAAAACCTGATGCCAAGGTTGCTGCACCAGCTAAGAAAGTGAAGGTTGTTGAGCCAAAGAAAGATGAAGAGGAAGGATCTGATGACGATTCTGATGATGATGATGAATCTGGAAGTGACGATGAGATGGAGGATGCTGATAGTGATAGTGATGAAGAGGGTGAAAGTGATGAAGATGAGGAAGATACCCCACCTAAGAAGGCGAATAAGAGGCCTAATGAATCTGCATCAAAAACACCAGTTTCTAACAAGAAAGCTAAAAATCCTACTACTCCTGAGAAGGCTGATGGTAAGAAAGGCGGACATACAGCTACTCCTCACCCAATGAAGAAGGGCGGAAAGACTCCCAGCAGTGAGACGCCCAAGTCTGGTGGAAATTTCTCGTGCAAAAGTTGCAGCAAGTCATTCAACTCTGAGAGTGGTCTCCAACAACATAGCAAGGCTAAGCATGGTCAGTGA 810 0.4432 MEFWGAEVKVGEVVKVDPTEFEACLHLSQVALGEAKKDKPSEPVLVYLKVGAQKFVLGTLTREKFPQIALDLVLEKEFEISHNSKNANDSDEEDIQLPITANGVAAPKAEAAKASQSKKPDAKVAAPAKKVKVVEPKKDEEEGSDDDSDDDDESGSDDEMEDADSDSDEEGESDEDEEDTPPKKANKRPNESASKTPVSNKKAKNPTTPEKADGKKGGHTATPHPMKKGGKTPSSETPKSGGNFSCKSCSKSFNSESGLQQHSKAKHGQ* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1992 269 Gene3D Nucleoplasmin core domain 1 95 - -
Aev10g1992 269 MobiDBLite consensus disorder prediction 206 220 - -
Aev10g1992 269 MobiDBLite consensus disorder prediction 191 205 - -
Aev10g1992 269 MobiDBLite consensus disorder prediction 123 139 - -
Aev10g1992 269 ProSitePatterns Zinc finger C2H2 type domain signature. 246 267 IPR013087 -
Aev10g1992 269 MobiDBLite consensus disorder prediction 140 177 - -
Aev10g1992 269 SUPERFAMILY beta-beta-alpha zinc fingers 220 264 IPR036236 -
Aev10g1992 269 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 265 - -
Aev10g1992 269 Gene3D Classic Zinc Finger 240 269 - -
Aev10g1992 269 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 265 - -
Aev10g1992 269 SMART c2h2final6 244 267 IPR013087 -
Aev10g1992 269 Pfam Nucleoplasmin-like domain 3 86 IPR041232 -
Aev10g1992 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 269 IPR013087 -
Aev10g1992 269 MobiDBLite consensus disorder prediction 233 269 - -
Aev10g1992 269 MobiDBLite consensus disorder prediction 84 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1992 Aev-Chr10 21155254 21157537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1992 1 267 C2H2 Transcription Factor Family AT5G03740 37.621 1.27e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g1992 NPL 9.7e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1992 - - gmx:100792094 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1992 10 21155254 21157537 Aev10g1992 10 21155254 21157537 ECH