Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1978 ATGAGTAGCAAGGTCAAAGTGACGGACCACCACTTATCCACCGTCCGATCCATCGTGGGGTCGGAATACAGCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAATGACGTCAATGCCGCAATCAACATCATCTTCGACACCCACACTCCCACCACCACCAGACCCAAATCCAGACCAAAACCCCAACCTCAACCTTCTCCTCTCAATTCAGCTCCTCAATCTGACACTGCCGCTACCACTCGCACTGTCGCAGCCAACCGCAACGATGCCGCTGCACGTGACATCAGCAGCGGCTCCGTTAGGTCCGACGACGTTTGGTGGTTCGCCGGTTCCGGTGAGATGGCAGGGCTGTCAACATGTAAAGGGAGGACCATAAATTCCGGTGATGCAGTGTCTTTCAAGTTCCCGGCGAAGGCTACCTCGGCTTCGCCCTCATCCGGGAAGGGGTTTGGACGGGGGCGGCAAGTGGCAGGGACTTGTTCAGAGATTGTTCGGTTCTCCACTGAACAAGCTGGAGAGATTGGTAGAATACCAAACGAATGGGCTCGATGCCTGTTGTCTCTTGTAAGAGATAGTAAGGTTAGAGTTGAGGGGCAATGTAAATTCGCACCTAATGTTTTGGGCATCATGGATACCATTGTTTTGTCAGTCAATGTATTTATCAACAGGTCAATGTTTATTAAGCACCACCAGGTTTCTCTGAAGGATGCTACAACCAATTCTTCTGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTCGGTTGCTAGGCTTGACGCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGACTTCTATTCCAACAAGCGTCCTTTCAGTCAGAAGATCCCTTTACAACTGACCAAGTCTGAGCATCCTTCTCAAAATGGTTGTGAGAATGACAAAGAGGATTCCATTTCTGAAAATGATCTTGATAACATAGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGATCCCCCAGGCAGTCTTCAGTGTGAACTGCGGTCCTATCAGAAGCAGGCTCTGTATTGGATGATCCAGATGGAGAAGGGACGTCCTGTGGATGAGACAGCAACAACCATTCATCCATGTTGGGAGGCATATCGCCTTGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCCACAATTGAATTTCCGAGCACCCTTCAAATGGCAAGAGGAGGAATTTTAGCAGATGCTATGGGACTTGGAAAGACCATCATGACAATATCCCTTCTCCTTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAGCTCAGACTCAGTCATATACTGAAGGTGAAGATAGTGATATGGTGCACAACCTTTCAAACATTCCAAAGAAGGCAACCAAATTTGCTGGTTTTGATAAGCTGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGCCCCATGACACTTCTTGGGCAGTGGAAGGCAGAAATTGAAACTCATGTGCAACCTGGCTCTCTGTCTCTATATGTTCATTATGGACAAAGTAGGCCAAAGGATGCAAGAAGTCTTGCTCAAAATGATGTTGTAATTACTACATATGGAGTTTTAGCCTCTGAGTTTTCCAGTGAGAATGCCGAGGATAATGGCGGACTTTTCTCAATTCGGTGGTTTAGAGTGGTTCTCGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAATTTCTATGGCTGCTGCAGCTTTAATTGCTGACAACCGTTGGTGTCTTACTGGTACTCCTATCCAGAACAACCTTGAGGATATTTACAGTCTTCTTCGGTTTCTAAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAAGGAGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGAAGGACCAAGTATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTCCCTCCTGCTGATATGCAGGTAATTTATTGTGAACCCACAGAGGCTGAGAAGGACTTTTATGAGGCTTTATTCAAAAGGTCTAAGGTCAAGTTTGACCAGTTTGTTGAACAAGGGCGTGTTCTTCATAATTATGCTTCAATACTGGAGTTGCTTTTACGTCTACGGCAATGTTGTGATCACCCATATCTAGTAATGAGCCGAGGTGATACTCAAGAATTTTCCGATCTAAACAAACTAGCTAAGCGCTTCCTTCGAGGAACCAGTGATGCTTCAGAAGGTGAAGTGAAAGATGCACCTTCCCGGGCTTACATTCAAGAAGTTGTGGAAGAGCTGCGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCATCGTTTATGCCGAGAATGCCTCTTGGCAAGTTGGCGAAATTCTACTTCTGGTTTATGCCCTGTTTGTAGGAAAATAATCAGCCGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAAATTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGTTCTTTTGCATGAACTTGAAAATCTTTGCTCGTCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCTTTTGCACGGAATAACATTTCATTTGTTCGCCTTGATGGGACATTAAATCAGCAGCAGCGGGAGAAAGTAATCAAACAATTCTCAGAAGACAGTGACACTATGGTGCTGTTGATGTCATTAAAAGCTGGTGGAGTGGGTATAAACCTAACGGCGGCTTCAAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTAGAAGAACAAGCTGTTATGCGTATTCATAGAATTGGACAAACAAAGAAGGTGGCCATCAGACGGTTTATAGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCTCGTAAACAACGAATGATTTCCGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGGATTGAAGAGTTGAAGATGCTGTTTACATAA 3066 0.4537 MSSKVKVTDHHLSTVRSIVGSEYSDMDIIRALHMAKNDVNAAINIIFDTHTPTTTRPKSRPKPQPQPSPLNSAPQSDTAATTRTVAANRNDAAARDISSGSVRSDDVWWFAGSGEMAGLSTCKGRTINSGDAVSFKFPAKATSASPSSGKGFGRGRQVAGTCSEIVRFSTEQAGEIGRIPNEWARCLLSLVRDSKVRVEGQCKFAPNVLGIMDTIVLSVNVFINRSMFIKHHQVSLKDATTNSSDESVFHPLPTLFRLLGLTPFKKAELTPGDFYSNKRPFSQKIPLQLTKSEHPSQNGCENDKEDSISENDLDNIVGVGSSSELEEMDPPGSLQCELRSYQKQALYWMIQMEKGRPVDETATTIHPCWEAYRLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGRGGSLGSQPIAQTQSYTEGEDSDMVHNLSNIPKKATKFAGFDKLMKQKNALTSGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDARSLAQNDVVITTYGVLASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADNRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDERGLKLVQSILKPIMLRRTKYSTDREGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQEFSDLNKLAKRFLRGTSDASEGEVKDAPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKIISRQDLITAPTENRFQIDIEKNWVESCKVTVLLHELENLCSSGSKSIVFSQWTAFLDLLQIPFARNNISFVRLDGTLNQQQREKVIKQFSEDSDTMVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1978 1021 Gene3D - 395 664 IPR038718 -
Aev10g1978 1021 SMART ring_2 786 825 IPR001841 -
Aev10g1978 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 1010 IPR027417 -
Aev10g1978 1021 Pfam Zinc finger, C3HC4 type (RING finger) 783 830 - -
Aev10g1978 1021 CDD RING-HC 786 825 - -
Aev10g1978 1021 Pfam SNF2-related domain 341 731 IPR000330 GO:0005524|GO:0140658
Aev10g1978 1021 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 105 1021 - -
Aev10g1978 1021 SMART ultradead3 334 636 IPR014001 -
Aev10g1978 1021 ProSiteProfiles Zinc finger RING-type profile. 786 826 IPR001841 -
Aev10g1978 1021 MobiDBLite consensus disorder prediction 50 83 - -
Aev10g1978 1021 Pfam HIRAN domain 113 219 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aev10g1978 1021 Gene3D - 668 1021 IPR027417 -
Aev10g1978 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 652 IPR027417 -
Aev10g1978 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 856 1021 IPR001650 -
Aev10g1978 1021 PANTHER DNA REPAIR PROTEIN RAD5 105 1021 - -
Aev10g1978 1021 CDD SF2_C_SNF 852 979 - -
Aev10g1978 1021 CDD UBA_Cbl_like 12 49 - -
Aev10g1978 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 614 IPR014001 -
Aev10g1978 1021 Pfam Helicase conserved C-terminal domain 860 968 IPR001650 -
Aev10g1978 1021 SUPERFAMILY RING/U-box 773 832 - -
Aev10g1978 1021 CDD DEXDc_SHPRH-like 338 652 - -
Aev10g1978 1021 SMART helicmild6 885 968 IPR001650 -
Aev10g1978 1021 ProSitePatterns Zinc finger RING-type signature. 801 810 IPR017907 -
Aev10g1978 1021 SMART HIRAN_2 111 223 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aev10g1978 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 849 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1978 Aev-Chr10 21061378 21067449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1978 6 1021 RAD5 or RAD16-like Gene Family AT5G22750 71.745 0.0 1498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev10g1978 SNF2_N 5.6e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1978 K15505 - gmx:100794452 1715.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1978 10 21061378 21067449 Aev10g1978 10 21061378 21067449 ECH