Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1960 ATGGCTGTTGCTGGCCTTCATAGTGTGGCTGTGATTGACTCCACGCTCCTTAGAGAGTCTCATTCTCAGTTATCTGGTAGCCGAGGAGGAGATGGAGGGAGGAGCGGCGCTGCCCGGTCATCTTCTTCGCTCTTGCAAATGAGGCGAGAGCCCGAAGAAGATGGGCATGTGGCGAGTCAAGTTCAACAGAGGAATGATGGGTTGATTGAAGGGCATGTGATGGAAGATGCAGTTTTGGGTGAGAATGAGTCAGAAACTTGGTCACAGTCACAAAGTCAGAATGAGTACCATGATGAGCAGGAAGGGTTAAGCAATCCTATCTGTGAGAGTTCTTCTGATCTAGGAGAAGTTGAAAGGGAAAGAGTGAGGAAAATTTTCAGGGAATGGATGAATAGTGGTCCTAGGGATCAGGATCATGGATCAAACATTTCCAGAGGAAGTAGTGGTTCAAGGGGAGAATGGCTTGGAGAAAATGAGCAGGAGAGGGTGAGTGTTATAAGGGAGTGGGTGCAAATGAGTAGCCAGCAGAGAGGTGTGTCTTCTGGCGAAAATAGGGAAGAGCAAGCTTCGGAGATTGGTTGCCAGATCGATCGTGTTCGTGATGGATTTGTTGTTAATCAACATGAGGGACAAACTGAGCAGACACGGAGGGGAATACGCAGGTTACGCGGCCGACAGGTTCTTCTTGATATGCTTAAGAAGGCTGAAATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGAACACCGGGCCGTTTCTCGTTTCCCGCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATTGACTGATAATAGCCGATCCTCTTCCATTGCAGAGAGTGAACTAGGCTTATTGAGGCAAAAGCAAACTGTATCGGGTTTAAGGGAAGGATTCTTCTTTAGAAAGGACAATTCTGGTTGCAATCAAGTGACCAGCAACCTATCTGATAGTGATGATGATGATGCTAATGCAAGTGAACATGCTGGAGCCAGTAGTTCACAAATGATCCCAACTTCACATCCTGAGAAATCTGAGTCTAATTGCAATGGAAGTGACAGACTAGATATATCAGGTGGTCAAAATTGTTTGCAGCAAGGAACCGCCTGCGAGAATTCAGACTGTCAAGACTCTGCTGCTTATGCTGAAGCAAGAGATCGTGCATTGTCAACCAGTATTGGGATTGAAACAGGAGATGGAACTGGACAGAATGTTGTTATGGTGACAGCCGAAGATGGTACTAGTGACCTTACCCAACAAAGCTTGCGGAGTGATGATACAGAGCATCGCAATATGCAGGTAAGCGAGGTACATACTGAGCAATCTGAGGGGCTTGATGTAGCCGAAGATGAAAACAATTCATCGCATCAACACAATCATGTAGAGGGCAATATTGTTGATGATGTGGATTGGGATGAATCTGTTGCTCTAGAAGGTGAGCAACAGGAAGAGGCTGTTACTGAGAATGATGGAAGTGACTGGCATCAAAATCATATTGAATGGAGTACCACTGAAGGAAGTGTGGATGATAACCAACTCAGCAGCTCAACAAATGAACTGCCCCAGAACATCTTGGGAAATGAAGATGGAGAAAACTCTCGTCTACAAGAAGCCACAGAAGTGTGGCAAGAGGACAGCGGCTTCCAAGAGGCTGTGGAAATCTGGTTGGGTAGGCCTTCTGATCACGAAGCAGCGCCAGTTGGTAGAATTCACGGGTTTTATTTTCCAGACGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTGAGTAGGAGAAGTGTCTCAAACCTCCTTCGGAGCAGTTTTCGCGAAAGTCTTGACCAGCTGATACAGTCGTATGTTGAAAGGCAAGGCCATGCTCACCTTGAGTGGGAACTGCAAGAAGCAACACCTTTCTATCCGCAGGCAGAACAGGACATGGAGCAGCAGAGCAGCGATCGGATTGTTGGTACTGAGGACACTGTTAATGGCCCACTTGGTGTACCCTTGCCACCAACACCTCCTCCCCTGCCTATATGGGATCGCCACTCGCGCCATGACAACTGGTCACACCATGACATAAATAATCAGCGCCTTGGAATTGAGTGGGATGTTATTAATGACTTGAGAGTTGACATGGTTAGGCTGCAGCAAAGGATGAATGGTATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTTTCTGCGGCCTTAAATCGCTCAACTGGTTCATCAGGAACACCTGAACATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGAAAAGGAATTTGCTGTATATGCTGCGAAACCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTACTCCAAAGTGGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTTGAAGTGATACGTGCTTATTCTATACAGTAG 2493 0.4633 MAVAGLHSVAVIDSTLLRESHSQLSGSRGGDGGRSGAARSSSSLLQMRREPEEDGHVASQVQQRNDGLIEGHVMEDAVLGENESETWSQSQSQNEYHDEQEGLSNPICESSSDLGEVERERVRKIFREWMNSGPRDQDHGSNISRGSSGSRGEWLGENEQERVSVIREWVQMSSQQRGVSSGENREEQASEIGCQIDRVRDGFVVNQHEGQTEQTRRGIRRLRGRQVLLDMLKKAEMERQREVQELLEHRAVSRFPHRNRIQALLRGRFLRNDRLTDNSRSSSIAESELGLLRQKQTVSGLREGFFFRKDNSGCNQVTSNLSDSDDDDANASEHAGASSSQMIPTSHPEKSESNCNGSDRLDISGGQNCLQQGTACENSDCQDSAAYAEARDRALSTSIGIETGDGTGQNVVMVTAEDGTSDLTQQSLRSDDTEHRNMQVSEVHTEQSEGLDVAEDENNSSHQHNHVEGNIVDDVDWDESVALEGEQQEEAVTENDGSDWHQNHIEWSTTEGSVDDNQLSSSTNELPQNILGNEDGENSRLQEATEVWQEDSGFQEAVEIWLGRPSDHEAAPVGRIHGFYFPDDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHLEWELQEATPFYPQAEQDMEQQSSDRIVGTEDTVNGPLGVPLPPTPPPLPIWDRHSRHDNWSHHDINNQRLGIEWDVINDLRVDMVRLQQRMNGMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTPEHDSPDDKSKWECVRKGICCICCETNIDSLLYRCGHMCTCSKCANDLLQSGRKCPMCQAPVVEVIRAYSIQ* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1960 830 PANTHER PROTEIN, PUTATIVE-RELATED 1 830 - -
Aev10g1960 830 SUPERFAMILY RING/U-box 777 823 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 746 768 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 511 535 - -
Aev10g1960 830 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 828 IPR013083 -
Aev10g1960 830 MobiDBLite consensus disorder prediction 333 359 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 80 116 - -
Aev10g1960 830 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 830 - -
Aev10g1960 830 Pfam Zinc finger, C3HC4 type (RING finger) 775 822 - -
Aev10g1960 830 ProSiteProfiles Zinc finger RING-type profile. 778 817 IPR001841 -
Aev10g1960 830 MobiDBLite consensus disorder prediction 135 154 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 317 359 - -
Aev10g1960 830 CDD mRING-HC-C3HC5_NEU1 778 816 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 19 60 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 82 111 - -
Aev10g1960 830 MobiDBLite consensus disorder prediction 129 157 - -
Aev10g1960 830 Coils Coil 706 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1960 Aev-Chr10 20940656 20944098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1960 778 824 C3H Transcription Factor Family AT3G06140 38.298 6.87e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1960 - - gmx:100804887 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1960 10 20940656 20944098 Aev10g1960 10 20940656 20944098 ECH
Aev10g1960 10 20940656 20944098 Aev04g2923 04 29019776 29024781 ECH
Aev10g1960 10 20940656 20944098 Aev04g2923 04 29019776 29024781 PCT