Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1955 ATGGAGATGGAATTAGGCATAGGCACCAACGATGTGGATGCATCCCACATCGCCAAGGGCAAGCGCACCAAGAGGCTCCGGCACCTGTCCCCTTGCGCTGTCACCGCCGCAATTTCCAGCTCCTCCAGCGCCTCCGAGGAGGAACACGGCATCAGCGGCGGTGACTGCGGGTCGTTCTCGTCCACCACCACCACGGCCACAACCTTGGAAGGAACCGATCAGGAGGAAGAAGACATGGCGAACTGCTTGATTCTGCTTGCTCAAGGAAAAAGAGGAGGAGAAGAAAAAAATCACAACAACAAGATCAGAGAAAAGAGTATGAGTAGCCGAAGATTCTCTGAGGTGACCACCACCACCAGCAGCGGCGCAACCGCCGCAACAAAAATCGGTTTCTTCGTGTATGAGTGCAAAACTTGCAACCGAACATTCCCTTCTTTTCAAGCACTTGGTGGGCACAGGGCCAGCCACAAGAAGCCAAAGCTGACACCACCAGAGGAAAAGAAACCGCAACTGGAATCATCGGTACCGGTAATTGCGAATTGCGAGTTTGAAGAAACAAAACAAGGCCTTGTGATGAGTACCCTCCTTCCCCCAATATCCCTTGAATTAGGAGGCTGCGGTGCTAACAATAACAATAACAATAACAATAGAGGAATATTGTTCCATGGCGGCAACGGCAACAGCAACAGCAACAGCAACAAGGGGAAGGTTCACGAGTGCTCGATTTGTGGGTCGGAATTCACATCTGGGCAAGCCTTGGGTGGACACATGAGGAGGCACAGGGCATCTACTAATAATACTACTAGTGCTCCTCATCAGGACATTGAAACAGCAAGTAGTACTTGGGATAACAAAAGGCCACGCAATAATAATGTTCTAGAATTGGATCTTAACCTTCCGGCGCCGCCCGAGGACGATCACCGGGATTCCACGTTTCACTTCACGGCCACACAGAACAAGTCCATCGTGCTCTCCGCTTCTCCGGCTTTGGTCGGTTGCCATTATTGA 1008 0.5119 MEMELGIGTNDVDASHIAKGKRTKRLRHLSPCAVTAAISSSSSASEEEHGISGGDCGSFSSTTTTATTLEGTDQEEEDMANCLILLAQGKRGGEEKNHNNKIREKSMSSRRFSEVTTTTSSGATAATKIGFFVYECKTCNRTFPSFQALGGHRASHKKPKLTPPEEKKPQLESSVPVIANCEFEETKQGLVMSTLLPPISLELGGCGANNNNNNNNRGILFHGGNGNSNSNSNKGKVHECSICGSEFTSGQALGGHMRRHRASTNNTTSAPHQDIETASSTWDNKRPRNNNVLELDLNLPAPPEDDHRDSTFHFTATQNKSIVLSASPALVGCHY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1955 335 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Aev10g1955 335 SUPERFAMILY beta-beta-alpha zinc fingers 133 260 IPR036236 -
Aev10g1955 335 MobiDBLite consensus disorder prediction 259 288 - -
Aev10g1955 335 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Aev10g1955 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Aev10g1955 335 SMART c2h2final6 134 156 IPR013087 -
Aev10g1955 335 SMART c2h2final6 238 260 IPR013087 -
Aev10g1955 335 MobiDBLite consensus disorder prediction 150 173 - -
Aev10g1955 335 MobiDBLite consensus disorder prediction 38 64 - -
Aev10g1955 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Aev10g1955 335 Pfam C2H2-type zinc finger 237 262 - -
Aev10g1955 335 Pfam C2H2-type zinc finger 133 159 - -
Aev10g1955 335 Gene3D Classic Zinc Finger 222 291 - -
Aev10g1955 335 PANTHER ZINC FINGER PROTEIN ZAT5 1 335 - -
Aev10g1955 335 MobiDBLite consensus disorder prediction 92 115 - -
Aev10g1955 335 MobiDBLite consensus disorder prediction 260 288 - -
Aev10g1955 335 MobiDBLite consensus disorder prediction 92 110 - -
Aev10g1955 335 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1955 Aev-Chr10 20909311 20910318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1955 13 335 C2H2 Transcription Factor Family AT5G04390 35.294 7.45e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g1955 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1955 - - aprc:113858527 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1955 10 20909311 20910318 Aev10g1955 10 20909311 20910318 ECH
Aev10g1955 10 20909311 20910318 Aev09g1850 09 22080825 22081895 ECH
Aev10g1955 10 20909311 20910318 Aev04g2933 04 29092315 29093430 ECH
Aev06g0301 06 2258507 2259412 Aev10g1955 10 20909311 20910318 ECH
Aev02g2258 02 23578047 23578928 Aev10g1955 10 20909311 20910318 ECH
Aev10g1955 10 20909311 20910318 Aev04g2933 04 29092315 29093430 PCT