Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1952 ATGGACAGAATGATCCATGACACAAATATCAATGATTTTGAGCTGCATGATTTCATCGACGACCCCAACTTTGATCAGTTTATCGATTTGATTCGAGGGGGGAATGAGGATGCCATTCCCAACTATGGTTCTGACATTATAAGTGATTACTTCCTGATTGATACTAATAATCAGTTACTTCCGTTTGATCAAACCAATAACAATAATAATAGTAATGATGATGATGTTGTGAATGTGTATGATCCTAGTCCTACACTTAGCTCTTTCTCTTGTTTTGATGATGGGGTGCTCAATAATGGAGAAGGAGAAGATTATTCTTCTGCAGCAACTGAGAATAATGTTAGTGCCAAACAGAGCCATAAAACTGATAGGTCCAAGACTCTGATTTCTGAGAGAAGGAGGCGAAGCAGAATGAAGGAAAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCCTCGATCATAGGAGATGCAGTGTCATATGTGCATGAGCTTCAAGAACAAGCCAAGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAACATCTTTATCAATGTCCGAAAATTATCAAGGATCGATAGAAACCCCTATTAATGTTCACGTCACCAACATAGGCCATCCAATCAGCAAGAAGATCATGCAGATAGAAATGTATCAAGTTGAGGAAAGAGGGTATTATGTGAAAATAGTGTGCAATAAGGGAGAAGGGGTGGCTGCATCACTGTACAAAGCTCTTGAGTCTCTTGCAGGTTTCAATGTTCGGAATTCAAACTTGAAAACACTTTGTGACAGCTTTCTACTTACATTTACATTGAACGTTAAAGGTTCTGAAGCAGAAATTAACCTGCCAAATTTGAAGCTGTGGGTCACCGGCGCTCTTCTCAACCATGGCTTTGAACTAATGGCATCGATCCATGCTTGA 939 0.3983 MDRMIHDTNINDFELHDFIDDPNFDQFIDLIRGGNEDAIPNYGSDIISDYFLIDTNNQLLPFDQTNNNNNSNDDDVVNVYDPSPTLSSFSCFDDGVLNNGEGEDYSSAATENNVSAKQSHKTDRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHELQEQAKKLKAEVAGLETSLSMSENYQGSIETPINVHVTNIGHPISKKIMQIEMYQVEERGYYVKIVCNKGEGVAASLYKALESLAGFNVRNSNLKTLCDSFLLTFTLNVKGSEAEINLPNLKLWVTGALLNHGFELMASIHA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1952 312 SMART finulus 128 177 IPR011598 GO:0046983
Aev10g1952 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 308 - -
Aev10g1952 312 Coils Coil 168 188 - -
Aev10g1952 312 MobiDBLite consensus disorder prediction 102 128 - -
Aev10g1952 312 CDD bHLH_AtFIT_like 121 196 - -
Aev10g1952 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Aev10g1952 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 9 308 - -
Aev10g1952 312 Gene3D - 112 188 IPR036638 GO:0046983
Aev10g1952 312 Pfam Helix-loop-helix DNA-binding domain 129 172 IPR011598 GO:0046983
Aev10g1952 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1952 Aev-Chr10 20886641 20888187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1952 8 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.582 3.13e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev10g1952 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1952 - - gmx:100805451 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1952 10 20886641 20888187 Aev10g1952 10 20886641 20888187 ECH
Aev10g1952 10 20886641 20888187 Aev04g2935 04 29116478 29119168 PCT