Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1942 ATGGTGTCCGACGCAAGCAAGAAGAAGGCCGCGCAGAAGAAGGCAGCGGCGGCGGCCAAGAGAGGTGGCAAGGCAGCTGCTGCTGCAGCTTCGTCGAAGGCGTCGGCGTCGGATAAACCCGCCGACAAGCTCGCCGATGGGATTAGTGAACTTCAGATATCGGATCGGACCTGCACCGGCGTTCTCTGCTCTCATCCCCTTTCCAGGGATATTCGGATAGAGTCTCTATCAGTTACTTTTCATGGACATGATCTGATAGTTGATTCTGAATTGGAGCTCAACTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGCAAATCTACTTTGCTTACAGCGATAGGTATGCGAGAGCTTCCTATTCCGGATCACATGGATATTTATCACCTTACCAGGGAAATTGAGGCCTCTGACATGTCTTCATTGGAGGCTGTCATTAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCATTGTCTGCACAGGACGATGGGGGTGGTGAAGCACTTGACCGTATTTATGAACGTTTGGAAGCCATTGATGCATCAACTGCTGAAAAACGTGCTGCTGAAATCTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCACTAGCACGAGCTTTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCATCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAACTTGAAGAAGTTTGATCGTATTCTGGTTGTGATTTCACACTCGCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAACTTGAAGAAAATCAGATGAAACAGTACAAATGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAAAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTGGTAAGGGACAAAGTTTTGGTATTCCGCTTTGTCGATGTGGGGAAACTCCCCCCTCCTGTTCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGACAATCTCATATACAAGAACATTGACTTTGGGGTTGACTTGGACTCTAGGATTGCTCTGGTAGGACCCAATGGAGCTGGGAAGAGTACATTACTGAAGTTAATGACTGGTGATTTGGTCCCTATAGATGGTATGGTTCGACGCCATAACCATCTTCGAATTGCACAGTTTCACCAGCACTTGGCTGAAAAGCTAGACATGGAACTGTCTGCACTCCAGTACATGATAAAAGAATACCCTGGAAACGAGGAAGAGAGGATGAGAGCAGCTATTGGGAAGTTTGGTCTGTCAGGCAAAGCCCAGGTGATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTGGCCTATAGACAACCTCACATGCTACTCTTGGATGAGCCAACTAATCACTTGGACATAGAGACAATTGACTCTCTGGCGGAGGCGTTGAATGAATGGGATGGAGGCTTGGTGCTTGTCAGCCATGATTTCAGGCTCATAAATCAGGTTGCCCATGAGATCTGGGTGTGTGCTGATCAAACTGTGACCAGATGGGAAGGTGATATTATGGATTTCAAGCAGCATCTCAAGGCAAAGGCTGGTCTATCCGAATGA 1794 0.4621 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKASASDKPADKLADGISELQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAEALSAQDDGGGEALDRIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDMELSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLSE* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1942 597 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524
Aev10g1942 597 SMART AAA_5 407 574 IPR003593 -
Aev10g1942 597 SMART AAA_5 95 297 IPR003593 -
Aev10g1942 597 CDD ABCF_EF-3 71 288 - -
Aev10g1942 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 318 IPR027417 -
Aev10g1942 597 Coils Coil 147 167 - -
Aev10g1942 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 - -
Aev10g1942 597 PANTHER - 1 596 - -
Aev10g1942 597 Gene3D - 351 596 IPR027417 -
Aev10g1942 597 CDD ABCF_EF-3 382 574 - -
Aev10g1942 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 597 IPR003439 GO:0005524
Aev10g1942 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 576 IPR027417 -
Aev10g1942 597 Coils Coil 289 309 - -
Aev10g1942 597 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Aev10g1942 597 Gene3D - 71 335 IPR027417 -
Aev10g1942 597 Pfam ABC transporter 282 358 IPR032781 -
Aev10g1942 597 Pfam ABC transporter 398 529 IPR003439 GO:0005524
Aev10g1942 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 311 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1942 Aev-Chr10 20805575 20808641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1942 91 269 Calmodulin-binding Proteins AT2G36910 28.415 2.81e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1942 K06185 - gmx:100785099 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1942 10 20805575 20808641 Aev10g1942 10 20805575 20808641 ECH
Aev10g1942 10 20805575 20808641 Aev04g2958 04 29354035 29357701 PCT