Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1938 ATGTCTCACCTAGGCGAATCGTCCTCCGACCCGAAATCGGGGAAGAAGGATTACTCGACGGCCATTCTGGAGCGGAAGAAGTCGCCGAACCGTCTGGTGGTTGATGAGGCCGTCAACGACGACAACTCTGTCGTGTCCATGCACCCTGAAACCATGGAGAAGCTTCAGCTTTTCCGCGGCGATACTATTCTCATCAAGGGCAAGAAACGTAGGGATACTGTTTGTATAGCTCTTGCTGATGACACATGTGAAGAGCCCAAGATCAGAATGAACAAAGTTGTGAGATCAAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCAGTGCACCAGTGCCCGGATGTGAAGTATGGGAAACGCGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCCTTCTTGAAACCTTACTTCTTGGAGGCTTATCGTCCTGTCAGGAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGCGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCATTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTCGGTGGAGTCAGAAAACAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGGCATCCCCAGCTATTTAAGTCTATTGGTGTGAAACCACCCAAGGGAATTTTACTTTATGGACCTCCTGGTTCTGGGAAGACATTAATAGCAAGAGCCGTCGCTAATGAGACTGGAGCTTTCTTCTTTTGTATAAATGGACCTGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAGGAGGCTGAAAAGAATGCACCATCCATCATCTTTATTGATGAAATCGATTCTATTGCACCCAAGAGAGAGAAGACACATGGTGAGGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTCATGGATGGATTAAAATCTCGTGCTCATGTCATTGTTATTGGAGCTACTAATCGCCCAAATAGCATTGATCCAGCATTGAGAAGGTTTGGTAGGTTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAGGTTCTTCGCATACACACCAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGAATTGCAAAGGATACTCACGGTTATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGAGAGAAGATGGACGTCATCGACTTGGAAGATGAAAATATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCACACTGCACTCGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTTAGTTGGGAAGACATTGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTTCTTTTCTATGGTCCTCCAGGATGTGGGAAAACTCTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTTATCAGTGTGAAAGGCCCAGAACTGCTTACAATGTGGTTTGGTGAGAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCGGCCCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGCGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGTATGTCTGCCAAGAAGACAGTGTTCATAATTGGGGCCACTAACAGACCTGATATCATTGACCCAGCACTTCTCCGGCCAGGCCGTCTGGATCAGTTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCTATCTCCAAAGATGTTGATTTGAGAGCACTAGCTAGATATACACAAGGATTCAGTGGTGCTGATATCACAGAGATATGCCAGCGAGCATGCAAATATGCTATAAGGGAAAACATAGAAAAGGACATAGAACGAGAGAGGAGGAGGAGCGAGAACCCTGAGGCCATGGATGAAGATATGGCCGATGATGAAGTCGCGGAGATCAAGGCTGCTCATTTTGAGGAGTCAATGAAGTTTGCACGCAGGAGTGTGAGTGACGCCGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCAAGGGGGTTCGGAAGCGAATTTAGGTTTGCAGAGAGTGGAAATACGGCTACTACTGGATCTGACCCCTTTGCGACTTCTGCTGGCGCGGCTGATGAAGATGATCTGTATAGTTAG 2427 0.4565 MSHLGESSSDPKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVSMHPETMEKLQLFRGDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDENIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMDEDMADDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAESGNTATTGSDPFATSAGAADEDDLYS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1938 808 PANTHER AAA-FAMILY ATPASE 6 783 - -
Aev10g1938 808 SUPERFAMILY ADC-like 27 111 IPR009010 -
Aev10g1938 808 Gene3D - 211 375 IPR027417 -
Aev10g1938 808 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Aev10g1938 808 MobiDBLite consensus disorder prediction 779 795 - -
Aev10g1938 808 MobiDBLite consensus disorder prediction 779 808 - -
Aev10g1938 808 CDD AAA 212 375 - -
Aev10g1938 808 SMART CDC48_2_2 131 197 IPR004201 -
Aev10g1938 808 SUPERFAMILY Cdc48 domain 2-like 113 205 IPR029067 -
Aev10g1938 808 MobiDBLite consensus disorder prediction 1 22 - -
Aev10g1938 808 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 32 769 IPR005938 GO:0016787
Aev10g1938 808 SMART AAA_5 515 654 IPR003593 -
Aev10g1938 808 SMART AAA_5 242 378 IPR003593 -
Aev10g1938 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 766 IPR027417 -
Aev10g1938 808 CDD AAA 485 652 - -
Aev10g1938 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 467 IPR027417 -
Aev10g1938 808 Gene3D - 656 765 - -
Aev10g1938 808 Gene3D - 469 652 IPR027417 -
Aev10g1938 808 Gene3D - 8 113 - -
Aev10g1938 808 Coils Coil 803 808 - -
Aev10g1938 808 SMART CDC48_N_2 31 114 IPR003338 -
Aev10g1938 808 Gene3D - 377 468 - -
Aev10g1938 808 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 6 783 - -
Aev10g1938 808 Pfam Cell division protein 48 (CDC48), domain 2 133 194 IPR004201 -
Aev10g1938 808 Pfam ATPase family associated with various cellular activities (AAA) 519 652 IPR003959 GO:0005524|GO:0016887
Aev10g1938 808 Pfam ATPase family associated with various cellular activities (AAA) 246 375 IPR003959 GO:0005524|GO:0016887
Aev10g1938 808 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Aev10g1938 808 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Aev10g1938 808 Pfam AAA+ lid domain 674 714 IPR041569 -
Aev10g1938 808 Pfam AAA+ lid domain 398 440 IPR041569 -
Aev10g1938 808 Gene3D - 114 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1938 Aev-Chr10 20782925 20787013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1938 448 711 Calmodulin-binding Proteins AT3G56690 48.485 7.17e-80 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1938 K13525 - gmx:547850 1531.92