Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1896 ATGATGTCCGAAGAAGATGCCTTTTCTGCTGCAGCCAACAGCATCACAGGCACCTTGCTTATTCATCAACAACCCCTCCACGACGATCCAATCATCTCATCATCAAACCCTAATAATCCACCAAGTAATAATCAAGTAGTATTAGTGAAGAGAAAGAGAAGCCTACCCGATCCAGATGCAGAAGTGATAGCGCTATCGCCAAAGTCGCTGATGGCGACGAACAGATTCGTGTGCGAGATATGCAAGAAGGGATTCCAGAGGGACCAGAATCTGCAGCTGCACCGGCGAGGCCACAACCTGCCGTGGAAGCTGAAGCAGAGGACGAGGGAGGAGGCGAGTAGGAAGAAGGTGTACGTGTGCCCTGAGAAGACCTGCGTGCACCACGACCCCTCCCGGGCACTGGGGGACCTCACGGGGATCAAGAAGCACTTCAGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGCCAAAAGTGCTCCAAGAAATACGCCGTTCAGTCTGACTGGAAGGCCCATTCCAAGATCTGTGGCACTAGAGAGTACACCTGTCACTGTGGCACTCTTTTCTCCAGGAAGGACAGCTTCATAACGCACCGCGCCTTTTGTGAAGCATTGGCGGAACAAAGTGTGAGAATGATGAGTACTTATTGTTCTGCTTCTTCACTTGCATCAAACGATAATTTGATCAACAACGCTACTGCTCAAGCTGCTACTTTACTAGGGTTCCAACAGCTGCATCATCAATTTGGGTCCATGCCTGAACCATTATTCATGGCGAATACTAATAATATTCTCGCACCAGACCACCATGCACACAAGCTCAGGCTACCTCTATGGCTAGACCAACCTAATTCCTCTTCTCCTCCTCATCATCTTAACAACATTATGATTCCATTGTTAAGTGACAATAATAATAGTTCAAGTGGTAACACGATGCCTGATTTGGTCCAGACAATGAACGTGTTTGGATCATCATCACAGACACCGTGGCCGCCCATGAATTATCATGGATACTCGTCAGATAACAATAACGGTGTATCCAATATGGCCGCAGCTGCAATGGTGATGATGAAGAGGGAGGAGGAAGAAGAAGATAACAAATTACAAGATAATAACAATGAGGAGGAGGAGGAGTTGTCGCATAGCGTGATGATGATGAGTTCATTGTACTCCTCATCATCAGCAAGTTTGAATTGTCAGAAGCAGCAGCAAGGAGGGCCATGTCATCATCACATGTCAGCCACTGCGTTGGTGCAGAAAGCAACCCAAATGGAATCTACGAGGAATACTACTAATGATGAGATTCAGAAGATGATGATTCCCAAGCAAGCAGCGGCAAATGTTGAAGGTAGTAGTAGTGGTGGTGGTTGGGAAAAGCATAAGAATGAGAATAATAATAATGAAGAGCAACTGGGGCTGACGAGAGACTTCCTTGGCGTTGGAGGAGCAGATATTATTCAAGTACAAGAGTCGCCATCAATATATAATATGATGATGCACCACCAACACTTTCCCACCACGCTAATCGGATCATCCCTCATCAACCTACAAACCACCCACTTCCCTCCTACTCGCCACCATCAATAA 1584 0.4691 MMSEEDAFSAAANSITGTLLIHQQPLHDDPIISSSNPNNPPSNNQVVLVKRKRSLPDPDAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRTREEASRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCQKCSKKYAVQSDWKAHSKICGTREYTCHCGTLFSRKDSFITHRAFCEALAEQSVRMMSTYCSASSLASNDNLINNATAQAATLLGFQQLHHQFGSMPEPLFMANTNNILAPDHHAHKLRLPLWLDQPNSSSPPHHLNNIMIPLLSDNNNSSSGNTMPDLVQTMNVFGSSSQTPWPPMNYHGYSSDNNNGVSNMAAAAMVMMKREEEEEDNKLQDNNNEEEEELSHSVMMMSSLYSSSSASLNCQKQQQGGPCHHHMSATALVQKATQMESTRNTTNDEIQKMMIPKQAAANVEGSSSGGGWEKHKNENNNNEEQLGLTRDFLGVGGADIIQVQESPSIYNMMMHHQHFPTTLIGSSLINLQTTHFPPTRHHQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1896 527 MobiDBLite consensus disorder prediction 358 377 - -
Aev10g1896 527 SUPERFAMILY beta-beta-alpha zinc fingers 75 173 IPR036236 -
Aev10g1896 527 PANTHER FINGER PROTEIN PCP1-LIKE 39 486 - -
Aev10g1896 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 486 - -
Aev10g1896 527 Coils Coil 356 378 - -
Aev10g1896 527 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Aev10g1896 527 MobiDBLite consensus disorder prediction 439 467 - -
Aev10g1896 527 SMART c2h2final6 118 148 IPR013087 -
Aev10g1896 527 SMART c2h2final6 153 173 IPR013087 -
Aev10g1896 527 SMART c2h2final6 76 98 IPR013087 -
Aev10g1896 527 Gene3D Classic Zinc Finger 72 99 - -
Aev10g1896 527 Gene3D Classic Zinc Finger 110 201 - -
Aev10g1896 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1896 Aev-Chr10 20467212 20469263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1896 49 263 IDZ Gene Family AT3G45260 68.304 4.83e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev10g1896 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1896 K25870 - gmx:100781896 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1896 10 20467212 20469263 Aev04g3029 04 30026686 30030476 PCT