Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1890 ATGGAAATTGATCTGAACCATGCAGTGACTGAGCCTGAAAAGAATGCAACCTGCAATGGGGACTCTGACAGAGGCGCTTCTTGTATGCGCTCTTCAACAACATGTTCATCCTCTAGTTCCCCTTCTTCAGCTGCTGTGCCTTCTTCTTATCTTGAGCTTTGGCATGCCTGTGCTGGCCCTCTCACTTCTCTCCCAAAGAAAGGGAATGTGGTCGTCTATTTCCCACAAGGGCACTTAGAACAAGCTGCATCTTTCTCCCCCTTCTCCACAATGGAGGTGTCAACATATGATCTTCAACCACAGATCTTTTGTAGAGTTGTCAATATCCAGCTACTTGCAAATAAGGAGAATGATGAGGTTTACACACAAGTTACTTTGCTTCCCCAGCCAGAGATGGCAGTGAAGTATTTGGAGGGCAAAGAGCTTGAGGAATTGGGAGCAGATGAGGAGGGAAGTGGAATATCACCAACAAAATCAACGCCTCACATGTTCTGCAAGACACTTACTGCCTCTGATACAAGCACTCATGGAGGGTTCTCTGTCCCTCGAAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCATCTTCTCACTACTGGATGGAGTATTTTTGTTAGCCAAAAGAATCTTGTGTCTGGTGATGCAGTGCTCTTCCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGGGCTGCTAGACCAAGAAATGGTCTTCCCGAATCAATTGTTGGCAACCAGAGTAGTCATCCCAATTTCCTTTCCTCTGTGGCTAATGCTATATCCGCAAAAAGCATGTTTCATGTTTTTTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTGCCCTACCAGAAGTATGTCAAAAGCATCAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCACCAGAAAGAAGGTGTACTAGTGGTATTGTGACTGGAATGAGTGATTTGGATCCATATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGGATTTCGAGACTAATCATCAGGATCGAGTATCAGCATGGGAGATTGATCCTTCTGCTTCTCTCCCTCCCTTGAGCATTCAGTCTTCCCCAAGGTTGAAGAAACTGCGGACAGGTCTGCAGGCTGCCTCACCCAGTCACCTAATCTCTGGGTTGGCAGCAGGAGGCACTGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGGTTTTGAGATTAGCTCCACAAGTCATCCAAATCTTGCATCAACTGGAGTAAGAAAGATCACTGCTGCTGATCTTATGAGGGTTCACCCTCCTAGTTACGCAGGCTTCGCGGAGGCTAATAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGAGGTCCCTGACAGGAAAGGTAGATTTGAGCCTTGGTGGTTGGGGCAAAACCAATGCCAGCTGCACAACTTACAACCTGCATCAGGCTACCAGACCCAACTTTGACTCTTTAGGACAAGAAGTCCTTCGAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGTCATGGTAGCAGCATGTTGTGCTCTAAACCCACCAATTTCCAACGAGAGAGTGTCGCATTTAACACGAGTCCTACATTTAACACTCCTTCTACTCAGTCAGGTATCATTAGAAATGAAGTTGGACGATCCGAACTCCCAATCCCACATGAGCAGAAACTGCAGGACAATACTTCTGGGGCTGCTTCTTTAGGGGGAAACAACATGAGGATTCCAAATGATGACAGTTTCAAGGGAAAGATTAATGGTTGTAAACTGTTTGGAGTTCCCTTGTCCGGGGAAATTAGCAACCAAAACATACAGAACTCTGCTAAAAGAAGTTGTACAAAGGTTCACAAACAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTATAGTGACCTGACGAGTGAACTAGAGAGGCTATTTGGCATGGAAGGCCTACTTAGAGATCCTGATAAGGGATGGAGGATCCTGTACACCGACAGCGAAAATGACATCATGGTTGTGGGAGATGACCCTTGGCATGAGTTCTGTGATGTGGTATCCAAGATCCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGTATGATCAGTGATGATACTCAGAGCTGTTTGGAAGAGGCACCTGTCATTATGGAGGTTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTCATCCCCAACTGTTGTTAGAGTCTAG 2445 0.4511 MEIDLNHAVTEPEKNATCNGDSDRGASCMRSSTTCSSSSSPSSAAVPSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSTMEVSTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQPEMAVKYLEGKELEELGADEEGSGISPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSSHPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYRWPKSKWRCLMVRWDEDFETNHQDRVSAWEIDPSASLPPLSIQSSPRLKKLRTGLQAASPSHLISGLAAGGTGFMDFEESVRSPKVLQGQENTSFMSLYYGCDTVTKQPGFEISSTSHPNLASTGVRKITAADLMRVHPPSYAGFAEANRFPRVLQGQEICPLRSLTGKVDLSLGGWGKTNASCTTYNLHQATRPNFDSLGQEVLRTAYFPYGDIHKAGHGSSMLCSKPTNFQRESVAFNTSPTFNTPSTQSGIIRNEVGRSELPIPHEQKLQDNTSGAASLGGNNMRIPNDDSFKGKINGCKLFGVPLSGEISNQNIQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYSDLTSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTQSCLEEAPVIMEVSKSSSVGQPDSSPTVVRV* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1890 814 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aev10g1890 814 MobiDBLite consensus disorder prediction 1 25 - -
Aev10g1890 814 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Aev10g1890 814 PANTHER AUXIN RESPONSE FACTOR 22 802 - -
Aev10g1890 814 Gene3D - 162 266 IPR015300 -
Aev10g1890 814 SUPERFAMILY DNA-binding pseudobarrel domain 155 281 IPR015300 -
Aev10g1890 814 Coils Coil 813 814 - -
Aev10g1890 814 CDD B3_DNA 162 264 IPR003340 GO:0003677
Aev10g1890 814 ProSiteProfiles PB1 domain profile. 686 770 IPR000270 GO:0005515
Aev10g1890 814 SUPERFAMILY CAD & PB1 domains 689 765 - -
Aev10g1890 814 Gene3D - 328 400 - -
Aev10g1890 814 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Aev10g1890 814 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aev10g1890 814 Pfam AUX/IAA family 680 770 IPR033389 -
Aev10g1890 814 SMART B3_2 164 266 IPR003340 GO:0003677
Aev10g1890 814 Gene3D - 682 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1890 Aev-Chr10 20433685 20438169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1890 48 814 B3 DNA Binding Superfamily AT5G60450 60.130 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aev10g1890 AUX_IAA 3.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1890 - - ahf:112706773 1336.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1890 10 20433685 20438169 Aev10g1890 10 20433685 20438169 ECH
Aev10g1890 10 20433685 20438169 Aev04g3032 04 30062734 30069133 PCT