Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1792 ATGAACTCGGACACTCAACCCGCCGGAACGGCGTCGTATTGGTGTTACAGCTGCACGCGCTTCGTTCACCTTATGCACCGACACGACGTGGTTTGTCCACACTGCCAAAGCGGTTTCGTCGAAGAGATCCATGCCGGTCAGTCACCTGCCATGTCTCTCTTCGCCGATGGCCTCCAAAGCTCTCGCCGCCAAGGGTTCCGACGGAGACGCCGCAACGCCGGTAACCGCTCGCCGTTTAACCCTGTGATTGTTCTCCGTGGACCTGGTGAGGACGGCAACGGTGGGGATAGCGAGGGTTCAACTTTTGAGCTGTACTACGATGACGGCGATGGCTCTGGTCTCCGCCCACTACCGCCGACGATGTCGGAGTTTTTGCTCGGATCTGGATTCGATCGGTTGTTGGAGCAGTTTTCCCAGATCGAGATCAATGGTTTTGGACGGCCGGAGAATCCGCCTGCTTCCAAAGCGGCGATAGAGTCAATGCCGACGGTGGAGATAGGAGACGCTCACGTGGATACAGAAACTCACTGTGCCGTGTGTAAGGAAGCTTTTGAGCTTGGTTCGGAGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATCCTTCCGTGGCTCTCGATGAGGAACTCGTGTCCAGTGTGCCGCCACGAGCTGCCGTCCGATCAGAGCACGGCGGAGGGAAGAGTGAACGGTCAGATCGACGAGGAAGCAGTAGGGTTGACCATATGGAGGTTACCAGGCGGCGGATTTGCCGTCGGCAGATTCTCCGGCGGACGAAGAGCTGGCGAGAGCCGTTTCCCGGTTGTATACACGGAGATGGACGGCGGCAGCGGTGGCGCCGGCAACTCAAACGGAGGTTCTAGAAGAATATCCCGCGAAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGCAGTTTCGTTTCGTTCTTTGGCAGGATCGGATCTAGGTCACGCTCCAATTCTTCGTCTTCTTCGTCGTCTTCGTACTCTGGTTCCGAGCACGGTTCAGTGAGTAGAAGCCACAGCTATTCGAGTTCAGTGTTCAATAGAAACTCAGGGAGAAGAAGGACTTTGGTGCTGGAAGATTGA 1116 0.5618 MNSDTQPAGTASYWCYSCTRFVHLMHRHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQSSRRQGFRRRRRNAGNRSPFNPVIVLRGPGEDGNGGDSEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGDAHVDTETHCAVCKEAFELGSEAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQSTAEGRVNGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRAGESRFPVVYTEMDGGSGGAGNSNGGSRRISREVGSSRVRENRGIGRIFRSFVSFFGRIGSRSRSNSSSSSSSSYSGSEHGSVSRSHSYSSSVFNRNSGRRRTLVLED* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1792 371 PANTHER OS05G0110000 PROTEIN 10 309 - -
Aev10g1792 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 309 - -
Aev10g1792 371 SMART ring_2 177 217 IPR001841 -
Aev10g1792 371 Pfam Ring finger domain 176 218 IPR001841 -
Aev10g1792 371 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Aev10g1792 371 SUPERFAMILY RING/U-box 157 224 - -
Aev10g1792 371 MobiDBLite consensus disorder prediction 64 101 - -
Aev10g1792 371 MobiDBLite consensus disorder prediction 280 294 - -
Aev10g1792 371 CDD RING-H2_RNF126_like 177 218 - -
Aev10g1792 371 Pfam Protein of unknown function (DUF1117) 241 360 IPR010543 -
Aev10g1792 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Aev10g1792 371 MobiDBLite consensus disorder prediction 274 301 - -
Aev10g1792 371 MobiDBLite consensus disorder prediction 323 358 - -
Aev10g1792 371 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1792 Aev-Chr10 19835960 19837075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1792 116 233 C3H Transcription Factor Family AT5G01980 44.538 7.88e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1792 - - aip:107612938 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1792 10 19835960 19837075 Aev10g1792 10 19835960 19837075 ECH
Aev10g1792 10 19835960 19837075 Aev04g3160 04 31137254 31138330 ECH
Aev10g1792 10 19835960 19837075 Aev04g3160 04 31137254 31138330 PCT