Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev10g1722 ATGTCTCCTCCGTCCAAGTCTGCGGTGGCCGCAGATAATTCCGGCGTCTCGAACGTAGAAAGAGAAACCGCTTCCGAAACACTCTTCGTCGGAAACCTTTCCTCCGACGTCATTGGCCCCGATCTGATGCACTTCTTCTCCCGTTACGAACCTCTCGACTGCCTCATCTCCTATACCTCCCGCACGTTCGCCTTTATTTTCTTCCGCAGCGTCCCTGAAGCTAAGGCCGCAAAGCTCGCCTTCCGCTCCGCTCTTTTCCGCGGCAATCGCATCCGAATCGATTTTGCCAGACCGGCGAAGCCGTGTAAATGTCTGTGGGTGTGCGGTGTAAGCCGTGCAGTCACGTCGCAAGAATTGGAGGCAATGTGTCGGAGCTTCGGTAGAATCGAGGACTTCAGGTTCTATAGGGACCGGAACACTGCGTTTGTGGAATTCGCAAATATAAATGAAGCTACTCGTGCCGTCAGAACTATGAATGGCAAGCTTTTTGGCGGTGACAGTATTCGCGTGGACTTCCTACGCATTGCGAAGAAAGATGTTTTGGCGGATTATGGGCAGTTTCAGGCAAGGCCACAGCATTCACAAATTTCCATGGGGAGGGATGGCCAACCAAGTAATGTTTTGTGGGTAAGTTATCCTCCTACTTTACATATTGACGAACAGGCGCTCCATAATGCCATGATTCTATATGGTGAAATCGAGAGAATCGAGAGTTTTCCTTCAAGACATTATTCGTTAGTTGTATTTAGAAGTGTTGATGAAGCTCGACGGGCCAAAGAAGGGCAGTCTTTTGATCCTCGCATAACAATTATGTACTTGAGTAGTGAGCTGGCACCTGGCAGATATTACCGTGACTTTAATCCTGGAAGCAAAGTGCCACAACCTCATGGATTACTTGTTGAACATCCCATTCAACCATTACAGCTGGATGGATTAAGCCATAGTCGTCCTTTGGGCCGACATAATTTTCCTGGACAGTTGCCTCAACGTGATTTTGTTGGACCCAATGTACCAACAAGACCTTTTGGTCCTAGAGGTATTGTGTCTTCTAACTTTGAACCAAAGTTTGCTGAGTTGGACACACACCACAGATTTTCTGATGGGATTAGGCATCATACAATACCCTCCTCTGGTGCATGGGATGTGCATGACATAAACAAATTTCAGAGAGATTCTAAACGGTCAAGGATAGATGGTGCTTTGTTCTTCAATAAAGCTCCATTTCCGTTAAGGAAGACTGATGATCGTGGATCAGGTCAAGAACAAACATTTGCAATTAACCAAGTCATTAATGGAGTTCATAGTTCCTTAAATCCTGAGTTCGACCATACCTGGCGTGGAATGCTTGCTAAAGGGGGATCACCTTTTTGCCATGCTAGATGTGTGCCTATTGGGAAAGGCATAGGGACTGCGCTTCCTTATGTTGTTGATTGCAAAGCTAGGACACAATTGAGCGTGCTTGCTGAATACTCTGCTAATGCAATTGGTTTTGACATTGTTTTCTTTCTCCCAGATAGTGAGGATGATTTCAGTTCATTCACTGAATTCATTAACTACCTTAAACAAAACAATCGGGCTGGTGTTGCCAGTTTGGTTGATGACACCAATTTATTCTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCCGATCGTCTATATGGTGTGTTTTTTAAATTTCCAGAAGTTGCAAATAGCACGCCAATGCAAAATTCAATGCATTTGCCTGTATCCTCAACACAATATTTGCATAAGATTCCTCCTACACAAGCTGAATATGATTTGATCTCTGCAAAGGAAGGACAGTTTTTGCCAAAGGATTATAACAGATCATTGCATGATGATATTAAACTTCCTCCAAAACCTCCCCATCAAGCTACAATTGGACCCTCTGCAGTTCATTCTGCTCCTCCTAATAATATTTCTGCATCCCAAGCTGGAGTAACATTAACACCTGAGCTTATTGCCACTATAACTTCTATATTGTCGGCAACTTCACAATCATCTGCATCTGATGTTGCCAAGATGGCAGTAGGCTCCATGACTGTGAAGTCACCATTTCCTTCTTTTGCAACAACTGATGGGAATCAATCTCTTCATCAAGTTGCAAATCACCCTGGTCATCCTCCTCAACATGTGGGGACTAATTATAACATTCTCGGTGGTCTATATCAGTCATGTCCACCATCATCTATTCCTGGTCACCCTGCCCAGGTGGTCTGTGGTAGTTCTTATTTCCAAGACACAACTGCAAGCCTGCAGCTGCAAGGTGCCGTTTCATCTAGGCCAATTACTAATGGCACCATAACGTGTCAAAGTGGCCAGCTAGCTGTATTCTCTCAGAGCAGTCAGCAGTATCAGGCTGAAGTCTCCTCTAGCACCCAAAAAGGCTATGAAGCAGTTCAGGGAACAGTGGGCAAGGTTAACTCAGAGCTTCCAGATCAACAAGTTCAACCTCTTCTCTCTGCAGTTGGTCTGGGGTCTTCAGAGGTGGAAGCTGGTAAGAACCATATATATCAGCCTTCGCTGAATCTTGCTGCCAACCTACTTCTTCAGATACAGCAAGGGAAAATCCAAGGAGGACATGAGCCACAAAATCAACAATGA 2622 0.4504 MSPPSKSAVAADNSGVSNVERETASETLFVGNLSSDVIGPDLMHFFSRYEPLDCLISYTSRTFAFIFFRSVPEAKAAKLAFRSALFRGNRIRIDFARPAKPCKCLWVCGVSRAVTSQELEAMCRSFGRIEDFRFYRDRNTAFVEFANINEATRAVRTMNGKLFGGDSIRVDFLRIAKKDVLADYGQFQARPQHSQISMGRDGQPSNVLWVSYPPTLHIDEQALHNAMILYGEIERIESFPSRHYSLVVFRSVDEARRAKEGQSFDPRITIMYLSSELAPGRYYRDFNPGSKVPQPHGLLVEHPIQPLQLDGLSHSRPLGRHNFPGQLPQRDFVGPNVPTRPFGPRGIVSSNFEPKFAELDTHHRFSDGIRHHTIPSSGAWDVHDINKFQRDSKRSRIDGALFFNKAPFPLRKTDDRGSGQEQTFAINQVINGVHSSLNPEFDHTWRGMLAKGGSPFCHARCVPIGKGIGTALPYVVDCKARTQLSVLAEYSANAIGFDIVFFLPDSEDDFSSFTEFINYLKQNNRAGVASLVDDTNLFLVPPSDFLTKVLKVTGPDRLYGVFFKFPEVANSTPMQNSMHLPVSSTQYLHKIPPTQAEYDLISAKEGQFLPKDYNRSLHDDIKLPPKPPHQATIGPSAVHSAPPNNISASQAGVTLTPELIATITSILSATSQSSASDVAKMAVGSMTVKSPFPSFATTDGNQSLHQVANHPGHPPQHVGTNYNILGGLYQSCPPSSIPGHPAQVVCGSSYFQDTTASLQLQGAVSSRPITNGTITCQSGQLAVFSQSSQQYQAEVSSSTQKGYEAVQGTVGKVNSELPDQQVQPLLSAVGLGSSEVEAGKNHIYQPSLNLAANLLLQIQQGKIQGGHEPQNQQ* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev10g1722 873 SMART rrm1_1 207 271 IPR000504 GO:0003723
Aev10g1722 873 SMART rrm1_1 104 171 IPR000504 GO:0003723
Aev10g1722 873 SMART rrm1_1 27 94 IPR000504 GO:0003723
Aev10g1722 873 Gene3D - 15 99 IPR012677 -
Aev10g1722 873 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 14 872 - -
Aev10g1722 873 Gene3D - 100 179 IPR012677 -
Aev10g1722 873 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 872 - -
Aev10g1722 873 SUPERFAMILY RNA-binding domain, RBD 27 172 IPR035979 GO:0003676
Aev10g1722 873 SUPERFAMILY RNA-binding domain, RBD 199 261 IPR035979 GO:0003676
Aev10g1722 873 CDD RRM3_Spen 105 174 - -
Aev10g1722 873 Gene3D - 194 277 IPR012677 -
Aev10g1722 873 Pfam SPOC domain 437 556 IPR012921 -
Aev10g1722 873 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Aev10g1722 873 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Aev10g1722 873 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Aev10g1722 873 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev10g1722 Aev-Chr10 19371015 19375321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev10g1722 11 198 Eukaryotic Initiation Factors Gene Family AT2G36660 25.366 3.37e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev10g1722 - - gmx:100777570 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g1722 10 19371015 19375321 Aev04g3263 04 31832498 31837611 PCT